1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAAATGACTAGACTGAAGCAAGCCAAGGAAGAAGCTGAAACAGAGGTTGCTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCGgtaatgttgataaactggtttataagccactgaaaatgtggttcttttattacatcttggttctttcaaacacttgttatattgatgagaaatcttgaatgtaaaaacag
species | Arabidopsis thaliana |
transcript | AT4G23710.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCG ACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGATEST: gi|19874789|gb|AU235620.1|AU235620
genomic: CTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCGgtaatgttga ... gtaaaaacagACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT
EST: CTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCG ACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGATEST: gi|19741003|gb|AU226356.1|AU226356
genomic: CTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCGgtaatgttga ... gtaaaaacagACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT
EST: CTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGA-GAAACTCGAAGCG ACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGATEST: gi|164088949|gb|ES209846.1|ES209846
genomic: CTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCGgtaatgttga ... gtaaaaacagACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT
EST: TTCCAGAGGAAACTCGAAGCG ACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT
genomic: TTCCAGAGGAAACTCGAAGCGgtaatgttga ... gtaaaaacagACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATGACTAGACTGAAGCAAGCCAAGGAAGAAGCTGAAACAGAGGTTGCTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCGgtaatgttgataaactggtttataagccactgaaaatgtggttcttttattacatcttggttctttcaaacacttgttatattgatgagaaatcttgaatgtaaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA