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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcacacattcagtcactttcatatagctccattccaattccatcttcttagtttaagaagattgttttttttgtctcgcag

Basic information

species Arabidopsis thaliana
transcript AT4G23470.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038887|gb|DR334642.1|DR334642
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038885|gb|DR334640.1|DR334640
EST:     GTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGCATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGA-GC
genomic: -TGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATG-ATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|116434599|gb|EG477191.1|EG477191
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|125221790|gb|EL235875.1|EL235875
EST:     ATGATATGTCAAG                         GTACGTCTGCTTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAG
genomic: ATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGC-TGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAG
EST: gi|86038879|gb|DR334634.1|DR334634
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|301501098|gb|HO206638.1|HO206638
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038889|gb|DR334644.1|DR334644
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038878|gb|DR334633.1|DR334633
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038880|gb|DR334635.1|DR334635
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038886|gb|DR334641.1|DR334641
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038882|gb|DR334637.1|DR334637
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038888|gb|DR334643.1|DR334643
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|301502433|gb|HO207973.1|HO207973
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|86038877|gb|DR334632.1|DR334632
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGGCTGTGCCGGTTACATGCCTTGGTAGTGGTAGGGTGTGGAGA
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTG-CTGTGCCGGTTACATGCCTTG-TAGTGGTAGG-TGTGGAGA
EST: gi|86038881|gb|DR334636.1|DR334636
EST:     TGTGCATCATACTTGCTTCGCA-GCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: gi|116434598|gb|EG477190.1|EG477190
EST:     TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG                         GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC