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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactatgggactaaatttcatttctttgttttggtttctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag

Basic information

species Arabidopsis thaliana
transcript AT4G22890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g41460.6 (Oryza sativa), 5'ss of exon 1
---TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactatgggactaaatttcatttc-tttgttttggttt-----ctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag----
    | || ||||| ||    || ||  | ||||| ||||| ||||| |||||||| || || ||| | ||||||||||||||||| |||||||||||||||||     |  ||    | |   |||| | |   ||||    | |      | ||  || | | |   |       |   | | | | |||| | |     
TAGGCCTTTTATTACGACAAGAAGGCCGTAATGTCGAATGAGGAGTTCGATAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta--taaaatattccttttcttctagcttgtacgagatcccggcccttactgtacactataagtgtgcatgccgctgaaaagaaaaagattatt

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g41460.2 (Oryza sativa), 5'ss of exon 2
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactatgggactaaatttcatttc-tttgttttggttt-----ctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag----
 | || ||||| ||    || ||  | ||||| ||||| ||||| |||||||| || || ||| | ||||||||||||||||| |||||||||||||||||     |  ||    | |   |||| | |   ||||    | |      | ||  || | | |   |       |   | | | | |||| | |     
GCCTTTTATTACGACAAGAAGGCCGTAATGTCGAATGAGGAGTTCGATAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta--taaaatattccttttcttctagcttgtacgagatcccggcccttactgtacactataagtgtgcatgccgctgaaaagaaaaagattatt

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g21900.1 (Oryza sativa), 5'ss of exon 2
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaa---tcatcaactatgggactaaatttcatttctttgttttggtttctttggtgc-aaagtcctaaatcttttattggtaatatgaaacacag-----
 | || ||||| ||    || || || || || || || | ||| |||||||| || || ||| | ||||||||||||||||| |||||||||||||||||     || || |||     |   | |   |      | |   | |    |  ||  ||     ||   | || |||| ||| | | | | |      
GCCTTTTATTACGACAAGAAGGCCATAATATCGAACGAGGTGTTCGATAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggtataaaatattccttttcttctagctgtacactataactgtgcacgccgctgaaaagaaaagattattgttggaaat-tcagagataatccta

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g64020.1 (Oryza sativa), 5'ss of exon 1
---TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactatgggactaaattt---catttctttgttttggtttctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag
    | ||||| || ||    || || |||||||| || || ||||| || ||||| || || ||| | ||||||||||| ||||| ||||| |||||||||||  |  |    |   |     | |    ||  || | | || || ||||   |||  |   ||||     |||    ||||||      |||
CAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAgtaagtactactccttccatctcttctgcggatacctatctgttagtatcttctttgccca---ctaa-----ttaacactaatatctttt-cag

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G885392_T01 (Zea mays), 5'ss of exon 2
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaa---------tcatcaactatgggactaaatttcatttctttgttttggtttctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag
 | ||||| || || ||||| ||||||||||| || || ||||| || ||||| || || ||| | ||||||||||| ||||| || |||||||||||| |         |||  || || |   |     | |   | ||| || |   |   | | ||     | ||| |    |  ||  | | | ||   ||| 
GCCTTCTACTACGAAGGCAAGGCGATCATGTCGAACGAGGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGGAGCAGCGTCGTGATGCTAAgtgagtgcgtttttcactaattaagcccccctcctgcgactttttattattactgtgtcgatgacgtatactagaaacgtatttccttagacgacg-acaa

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G03730.1 (Glycine max), 5'ss of exon 3
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactat-------gggactaaatttcatttctttgttttggtttctttggtgcaaagtcctaaatcttttat-------tggtaatatgaaacacag
 | ||||||||||| || || || |||||||| ||||||||||||||||| || || |||||  | ||||||||||||||||| ||||| ||||||||||     |||||         |   ||  |  |  | |  |  ||    ||   ||   ||       |  ||||||| |       || |  |       ||||
GCATTCTATTATGAGGGAAAGGCTATCATGTCAAATGAAGAGTTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggcaacttcactctcagtagctgcagctgttgttgtcattgaatttgtgttaacgcgggtgtatttatcttttttaagtctttgttggttgattgtacag

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G14240.1 (Glycine max), 5'ss of exon 3
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactatgggactaaatttcatttctttgttttggtttctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag
 | ||||||||||| || || || |||||||| |||||||| |||||||| || || |||||  | ||||||||||||||||| ||||| ||||||||||     |||||  |      | || ||  | || ||  |   ||| |   |  |||||| | |    ||  ||| |  ||          
GCATTCTATTATGAGGGAAAGGCTATCATGTCAAATGAAGAATTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatggggcaacttcgctctatagttgcagctgtt-gtcataacttcatctttttaaagtcttta----ttggttgattgtacag-------

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G42360.2 (Glycine max), 5'ss of exon 3
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgta----atcatcaactatgggacta--aatttcatttctttgttttggtttctttggtgcaaagtccta--aatctttta--ttggtaatat----gaaacacag-------------------
 | ||||||||||| || || || || ||||| ||||| || |||||||| ||||| |||||  | ||||||||||| ||||  ||||||||||||||||    || || |  |||| | |||  |||||||||   |     | | |    ||     || ||||   ||  || ||  ||| |  |||    ||  ||                      
GCATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattattattatatatgtggctagcaatttcattcactgacagttgctagcatg-catgaattcctgctaactttgtaaattgattttatttttgagtcattataattggttcgctgtgtag

upper sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0025g04710.t01 (Vitis vinifera), 5'ss of exon 3
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatc--aactatgggactaaatttcatttctttgttttggtttct----ttggtgcaaagtcctaaatcttttattgg-taatatgaaacacag
||||| |||||||| || || || || ||||| ||||| || ||||| ||||| || |||||  | ||||||||||||||||| ||||| ||||||||||   ||    | |||   | | ||| || ||    | |  | |||| |     |  |  ||  ||  |||| |   ||||| | || || ||  |||
TCTTTTTATTATGAGGGAAAGGCTATTATGTCAAATGAGGAATTTGACAACCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTTATGCTAAgtacatatttagattatcttaatcaatatctttatgatataatagtttgtaatactttttaaatctctaaaatgtaaaattggcttatgtgtaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125030372|gb|EL102641.1|EL102641
EST:     AAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTAT
genomic: AAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTAT
EST: gi|86028448|gb|DR324201.1|DR324201
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGGACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTG
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTG
EST: gi|86028482|gb|DR324235.1|DR324235
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGA
EST: gi|86028462|gb|DR324215.1|DR324215
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGG
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGG
EST: gi|125144622|gb|EL180192.1|EL180192
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTAT
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTAT
EST: gi|116431831|gb|EG474423.1|EG474423
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|125273958|gb|EL288043.1|EL288043
EST:     ATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: ATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028453|gb|DR324206.1|DR324206
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCAT
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCAT
EST: gi|86028472|gb|DR324225.1|DR324225
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028476|gb|DR324229.1|DR324229
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAAC
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAAC
EST: gi|86028478|gb|DR324231.1|DR324231
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGGATGAACAAAGATTCTTGGAAGC
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCG-ATGAACAAAGATTCTTGGAAGC
EST: gi|86028456|gb|DR324209.1|DR324209
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028473|gb|DR324226.1|DR324226
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028465|gb|DR324218.1|DR324218
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTC-ATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|116431832|gb|EG474424.1|EG474424
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028455|gb|DR324208.1|DR324208
EST:     AACCTTAAAGA-GAGTTAATTGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTT
genomic: AACCTTAAAGAAGAGTTAAT-GTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTT
EST: gi|86072245|gb|DR368002.1|DR368002
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028461|gb|DR324214.1|DR324214
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGGTTTCCTGG
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATG-TTTC-TGG
EST: gi|86028468|gb|DR324221.1|DR324221
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGG
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGG
EST: gi|125084515|gb|EL144695.1|EL144695
EST:     CAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: CAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028458|gb|DR324211.1|DR324211
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGT
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGT
EST: gi|86028479|gb|DR324232.1|DR324232
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|86028483|gb|DR324236.1|DR324236
EST:     AACCTTAAAGAAGAGTTAATGTGGGAAGGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGA-CAAAGATTCTTGG
genomic: AACCTTAAAGAAGAGTTAATGTGGGAAGG-AAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGG
EST: gi|86028480|gb|DR324233.1|DR324233
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTG
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTG
EST: gi|125012151|gb|EL084420.1|EL084420
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTA
EST: gi|116424112|gb|EG466704.1|EG466704
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAA
EST: gi|125274807|gb|EL288892.1|EL288892
EST:     TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAA                         GTTCCGATGAAACAAAAGATTCTTGGAAGCTTCCATGGCTTATGT
genomic: TAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatca ... tgaaacacagGTTCCGATGAA-CAAA-GATTCTTGGAAGCTTCCATGGCTTATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAgtaatcatcaactatgggactaaatttcatttctttgttttggtttctttggtgcaaagtcctaaatcttttattggtaatatgaaacacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA