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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTAATCTCGAAGTTGGTGCATCAGGGAAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGgtacatagtcttaacgctcaagaattgctttgctttgaaatgttttcttaatcaggatttgtgtgtttggttgacattatttggtttctag

Basic information

species Arabidopsis thaliana
transcript AT4G22540.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22540.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G41940.1 (Glycine max), 5'ss of exon 3
------------------------GCAGCTAATCTCGA-AGTTGGTGC--ATCAGGGAAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGgtacatagtcttaacgctcaagaattgctttgctttgaaatgttttcttaatcaggatttgtgtgtttggt-tgacattatttggtttctag--------
                         | ||||  | |||  ||   | |  || |   ||| ||||||||||||| || ||||||||||| ||||||||||  |     ||       |   ||  | || ||  |  | | || |   |   |  ||   | |||| | | | |    |  | || ||         
GCAGCTAATACTGAGCCTGAGGCCTCTGCTATACACGATGGTGAATACCAATTAACAAAGAATGAGTTTTCAAGTCTTGGACGTGGAAAATATAGTGgtatttctatatatattatcaatgtttttctgtttatatctatgttgtggcttttgtctttcttatttgatgtaataagcatgtgcttgtatgtggaatc

upper sequence: AT4G22540.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 3
------------------------GCAGCTAATCTCGA-AGTTGGTGC--ATCAGGGAAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGgtacatagtcttaacgctcaagaattgctttgctttgaaatgttttctta-atcaggatttgtgtgtttggt-tgacat-tatttggtttctag-------
                         | ||    |  || |||   | |  || |   ||| |||| |||||||| |||||||||||||| ||||||||||  || | |||    |||  |  | |||  | ||  ||| | | | ||  |   ||  | | | |||    || ||| || || | || |         
GCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgtat-tacttttatatgtcactatatacttctcattataatttatacatatgttgtgacctttctttttctcatgtcatgtaattagcttgtgctaatatt

upper sequence: AT4G22540.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 3
------------------------GCAGCTAATCTCGA-AGTTGGTGC--ATCAGGGAAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGgtacatagtcttaacgctcaagaattgctttgctttgaaatgttttcttaatcaggatttgtgtgtttggttgacattatttggttt--ctag---------
                         | ||    |  || |||   | |  || |   ||| |||| |||||||| |||||||||||||| ||||||||||  |  | |||    |||     | |||  | ||  ||| | | | ||    |      | |  |   || |  | ||| | ||   |||          
GCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgta--ttattttatatgtcactttatacttctcattataatttatacatatgttgtgacctttttctcatttcatgtaattagcttgtgctaatattcatat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125248587|gb|EL262672.1|EL262672
EST:     AAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTG                         AATGCAGCACAACTGCTTCATCTGATGGTAAACAAGAGTTTGAGGATGTGT
genomic: AAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGgtacatagtc ... tggtttctagAATGCAGCACAACTGCTTCATCTGATGGTAAACAAGAGTTTGAGGATGTGT