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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTAACTGGTATTGTTCTCATTGGCGGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGgtaaattctatttctcaataccgctatttttacgaatactcaaatgattttgaattcatctcaagaccatctataacacttttcctatgttctgtag

Basic information

species Arabidopsis thaliana
transcript AT4G21810.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G27600.1 (Glycine max), 5'ss of exon 3
TGTTCTAACTGGTATTGTTCTCATTGGCGGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGgtaaattctatttctcaataccgctatttttacgaatactcaaatgattttgaattcatctcaagaccatctataacacttttcctatgttctgtag
|||  | ||||| ||||||||  |||| || |||||||||||||| || |  || ||| | ||||| || ||||| ||||| |||||||| || |||||||||| |   |||| |   |  | ||  |        |  ||||||   |   ||||||     | ||     |    | |||| || | ||| |   
TGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcacatttttatttttcactcctc------gtgttcaaatctgtcacaattcac----aaacgtgaaagcttaatttttcttttttcag---

upper sequence: AT4G21810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv10s0116g00010.t01 (Vitis vinifera), 5'ss of exon 1
TGTTCTAACTGGTATTGTTCTCATTGGCGGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGgt-----aaattctattt-ctca-ataccgctatttttacgaatactcaaatgattttgaattcatc--tcaagaccatctataacact-tttcctatgttctgtag
|||| |||| || |||||||||||||| || |||||||| ||| | || |  |||||  | ||||| || ||||| |||||||||||||| |||||||||||     || || | ||| |||| | |  |    | ||        |  | | ||| || |   |    |   ||     | | || || |||    |||| |  ||
TGTTTTAACGGGGATTGTTCTCATTGGGGGGATGATACCATATGTATCAGAGTCATTTGCAAAAATTATATTCCTGAGCAATTCATTGACATTCATGATGgttagttaatttttctttgctcacacatagaagatgttttattggttacagtcattgtgcaacaactgttttggatgtcttgttactctgtttttcctgttgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164073254|gb|EL975585.1|EL975585
EST:     CAATTCATTGACTTTCATGATG                         GTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTTGGC
genomic: CAATTCATTGACTTTCATGATGgtaaattcta ... tgttctgtagGTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTTGGC
EST: gi|124729021|gb|EH820423.1|EH820423
EST:     CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATG                         GTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTT
genomic: CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGgtaaattcta ... tgttctgtagGTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTT
EST: gi|125103542|gb|EL157912.1|EL157912
EST:     TTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATG                         GTCTCTGTATGGAGTAAACAA
genomic: TTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGgtaaattcta ... tgttctgtagGTCTATGTATGGAGTAAACAA