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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgttctcaacttagttctggtttttgcatgtttgatttggaaatggtggattttgaaagctgcatctttttaagtatctaatgtttctgtgaggtaatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G21790.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038980|gb|DR334735.1|DR334735
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTAGGTACTATYGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|164219991|gb|ES190089.1|ES190089
EST:     TGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: TGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|301502535|gb|HO208075.1|HO208075
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|86038985|gb|DR334740.1|DR334740
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTT
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTT
EST: gi|86038987|gb|DR334742.1|DR334742
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|86038988|gb|DR334743.1|DR334743
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGNTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|125206042|gb|EL220996.1|EL220996
EST:     ATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGCACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: ATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|124909554|gb|EH983634.1|EH983634
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTT
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTT
EST: gi|86038984|gb|DR334739.1|DR334739
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|116408117|gb|EG450709.1|EG450709
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|86038989|gb|DR334744.1|DR334744
EST:     GGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCT
genomic: G-CGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTG-TTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCT
EST: gi|125311321|gb|EL325406.1|EL325406
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCT
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCT
EST: gi|86038983|gb|DR334738.1|DR334738
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCA
EST: gi|116479083|gb|EG521675.1|EG521675
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCT
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCT
EST: gi|86038986|gb|DR334741.1|DR334741
EST:     GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG                         GCTCTTTGCTG
genomic: GTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGgtgagagtgt ... ggtaatgcagGCTCTTTGCTG