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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGATGGGgtgagtatgattctttataagggttctcttcttagatatgccttcagttttggttttttgatgtctcctacttggtatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19185.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G21200.1 (Glycine max), 5'ss of exon 4
TGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGATGGGgtgagtat-----------gattctttataagggttctcttcttagatatgccttcagttttggttttttgatgtctcctacttggtatgcag---------------------------------------------------------------------------
| || |||||||| ||  | |  || || ||||| |||||||||||||| ||||| ||| |||  |||||||| || ||||| |||||||| |||||||||| ||| |           | ||||  |||    |    ||  |  || |  |||   || |||       |  ||  ||   | ||   |||                                                                           
TTTTGTTTCTTATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCGGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtttctctcattttagtttctacatattattgtgttttgttaatttatctttttttctggaacacacaactccactctattgtgcacagaagtttgtacattaattaaattaatatacatcaggacatagagtaatgtgcaccttgataaacttattcatgcag

upper sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G08380.1 (Glycine max), 5'ss of exon 3
TGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGATGGGgtgagtatgattctttataagggttctcttcttagatatgccttcagttttggttttttg------atgtctcc---tacttggtatgcag---------------------------------------------------------------------------
| || ||||| || ||  | |  || || ||||| |||||||||||||| ||||| ||| |||  || ||||| || ||||| |||||||| |||||||||| ||| |   || ||  |     |   |  | |  | |    | | |||   ||||||       |   ||||      ||| |   |||                                                                           
TTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctctctcgtttcagtttctacatattcatgtgttttgttaatttatcttttttctggaacacaactccatgcttttgttgcacagaagtgtgtacattaattaaattaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877450|gb|AU238281.1|AU238281
EST:     TTCAACCATCCATNCCGGTCTTCACCTTNTCTCTTGGCTGTCATGATGGG                         TACAGAAAGAGTGAATTTGTTGAGAATCGAANGGT-AAACTAAGGTTGGAA
genomic: TTCAACCATCCATCCCGGTCTTCACCTT-TCTCTTGGCTGTCATGATGGGgtgagtatga ... tggtatgcagTACAGAAAGAGTGAATTTGTTGAGAATCGAA-GGTCAAACTAAGGTTGGAG