1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCCTCCTGTGTTTGATAGAAAGCAGTGTCTGGTTCCTCCTCCTGATGGCTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGgtatatgtttgtcccttttctcaaccttatgattgcatctcttaattacttgtatctctaaatctctcctgtcttcagctatttgaagtaagttggtaatttgatttcag
species | Arabidopsis thaliana |
transcript | AT4G19120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAG GAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCTEST: gi|116410687|gb|EG453279.1|EG453279
genomic: TATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGgtatatgttt ... ttgatttcagGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCT
EST: TATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAG GAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCTEST: gi|116420417|gb|EG463009.1|EG463009
genomic: TATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGgtatatgttt ... ttgatttcagGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCT
EST: AAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAG GAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCTEST: gi|116420421|gb|EG463013.1|EG463013
genomic: AAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGgtatatgttt ... ttgatttcagGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCT
EST: TATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAG GAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCT
genomic: TATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGgtatatgttt ... ttgatttcagGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTCCTGTGTTTGATAGAAAGCAGTGTCTGGTTCCTCCTCCTGATGGCTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGgtatatgtttgtcccttttctcaaccttatgattgcatctcttaattacttgtatctctaaatctctcctgtcttcagctatttgaagtaagttggtaatttgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG