1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGTCAAGCCAAAGAGCTTATGGAACACCTCGAAAGCGTGCTTACCAATGATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgttaaaagagttggtttattgtctgttttctcttttcaagcatgaaagttccgatagctaaacttttttgttgttccgataaaaaaaacag
species | Arabidopsis thaliana |
transcript | AT4G17770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAG GGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAAEST: gi|164233672|gb|ES016342.1|ES016342
genomic: ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgtt ... aaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA
EST: ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAG GGTGTGAACAAAGGTCTTGTGGCAGAGAGGEST: gi|164064439|gb|ES173418.1|ES173418
genomic: ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgtt ... aaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGG
EST: TTAAACCACAG GGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA
genomic: TTAAACCACAGgtaagacgtt ... aaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCAAGCCAAAGAGCTTATGGAACACCTCGAAAGCGTGCTTACCAATGATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgttaaaagagttggtttattgtctgttttctcttttcaagcatgaaagttccgatagctaaacttttttgttgttccgataaaaaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG