Sequence
atgc intronic sequence ATGC exonic sequenceTTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtttgtttcttttgacccaatttggatcttttcatgaccccatcgttgtatctttttgttctttacgctattcatctacagtatttttcaact...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G17615.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G17615.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G107575_T01 (Zea mays), 5'ss of exon 2
TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtttgtttcttttgacccaatttggat--cttttcatgaccccatcgttgtatctttttgttctttacgctattcatctacagtatttttcaact-------
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TCAGCGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtata--------ttctattggtcgcctctgtattccttatcatattgccagctttgggtatgaacgtcaaatatgctcagtagccatgtcatcgtt-agctctccttg
upper sequence: AT4G17615.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G015324_T01 (Zea mays), 5'ss of exon 2
TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtttgtttcttttgacccaatttggatctttt--catgaccccatcgttgtatctttttgttctttacgctattcatctacagtatttttcaact------
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TCAGTGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCAGTGATTGACGATGGCCTGATCAACAAGgtata--------ttctattagtcatctctgtattccttgctatattgtcagttttgtgtatgaacatcaaatatgctcactagccatgttgtagttagccctcattg
upper sequence: AT4G17615.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G05580.1 (Glycine max), 5'ss of exon 3
TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtttgtttcttttgacccaatttggatcttttcatgaccccatcgttgtatctttttgttctttacgctattcatctacagtatttttcaact-
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TTACTGTCAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacatagaaaataactt-tttatttttattttttgcattagttgatctatgatgattgttactttttattgtttctatctccactcattctctatga
upper sequence: AT4G17615.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0236g00140.t01 (Vitis vinifera), 5'ss of exon 3
TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagt--ttgtttcttttgacccaatttggatcttttcatgaccccatcgttgtatctt-tttgttctttacgctattcatctacagtatttttcaact
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TTAGTGTGAGTGAAGTTGAAGCACTATTTGAGCTATTCAAGAGCATTAGCAGTTCTGTAATTGATGATGGGTTAATAAACAAGgtaatctgtaatggtattaatttttgctttttctttgtcctcatttcttttctgttttgtttcctttgtttttttctctactatgaaattatatttttgg---
upper sequence: AT4G17615.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 3
TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgta--caaagtttgtttcttttgacccaatttggatcttttcatgaccccatcgttgtatctt-tttgttctttacgctattcatctacagtatttttcaact
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TTAGTGTGAGTGAAGTTGAAGCACTATTTGAGCTATTCAAGAGCATTAGTAGTTCTGTAATTGATGATGGGTTAATAAACAAGgtaatctgcaatggtattaatttttgctttttctttgtcctcatttcttttctgttttgtttcctttgtttttttctctactatgaaattatatttttgg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86058729|gb|DR354486.1|DR354486EST: TATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAG GAGGAGTTTCAACTTGCTTTGTTCAAAAGCCGGAAGAGGGAGAATATATTT
genomic: TATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtt ... atgtatgcagGAGGAGTTTCAACTTGCTTTGTTCAAAAGCCGGAAGAGGGAGAATATATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtttgtttcttttgacccaatttggatcttttcatgaccccatcgttgtatctttttgttctttacgctattcatctacagtatttttcaact
- - - - - - - - - - - - - - - - - - - AGAGCA