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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGAAGCAGGAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctgcgtctcatttatcttctggagacaggattttgattctttgattcattgtttttgtatctctgctctatag

Basic information

species Arabidopsis thaliana
transcript AT4G16760.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164003737|gb|ES004514.1|ES004514
EST:     GCACTTTATCGATCAGCCTGCCTATGTGGATCTGCACTGG                         GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
genomic: GCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
EST: gi|116424738|gb|EG467330.1|EG467330
EST:     GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG                         GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
EST: gi|125189333|gb|EL204287.1|EL204287
EST:     GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG                         GGAATGTTTGTG
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTG
EST: gi|116424736|gb|EG467328.1|EG467328
EST:     GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG                         GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
EST: gi|125027657|gb|EL099926.1|EL099926
EST:     GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG                         GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAG
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAG