Sequence
atgc intronic sequence ATGC exonic sequenceTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtgaagtgcctttcctttgtctatctagtgagttaatagagtagcattctttggaagtttgtagttttgattgctattttttgtttatgttag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G14910.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 3
TGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtgaagtgcctttcctttgtctatctagt-gagttaatagagtagcattctt--tggaagtttgtagttttgattgctattttttgtttatgttag
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TGCTTCACATGGGCTGTTAGATGTACATGTAAAGGCTACAGGTGACATACATATTGATGATCATCACACAAATGAAGACGTTGCCCTTGCTATTGGAACAgtatgcaaaccattacgttagcttattctttctttttgattttctatattacaattgttccttgaaactta-aatgtgctttattatcttgcattgaagat--
upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G13140.1 (Glycine max), 5'ss of exon 2
TGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtgaagtgcct-------ttcctttgtctatctagtgagttaatagagtagcattctttggaagtttgtagttttgattgctattttttgtttatgttag
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---TTCACATGGGCTGTTCGATGTACACGTAAAGGCTACAGGTGATGTACATATTGATGATCATCACACAAATGAAGACGTT-CCCTTGCTATTGGAACAGTATgtaaaccattacatgagttgattctttcgtttcttttggttttctatattacaattgctccttgaaactca-aatgtgcttcattatcttgcattggagat--
upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G39370.1 (Glycine max), 5'ss of exon 3
TGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtgaagtgcctt------tcctttgtctatctagtgagttaatagagtagcattct--ttggaagtttgtagttttgattgctattttttgtttatgttag
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TGCTTCACACGGGCTGTTCGATGTACGCATAAAGGCTACAGGTGACATACATATTGATGATCATCACACGAATGAAGACGTTGCCCTTGCTATTGGAACCgtatgcaaaccattacatgagctgattctttctttactttttggttcaatatgataaaattgtaacttgaaactaaaacgtct--tcattatcttgcattga------
upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g03430.t01 (Vitis vinifera), 5'ss of exon 3
TGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtgaagtgcctttcctttgtctatctagtgagttaatagagtagcattctttggaagtttgtagt--tttgattgctattttttgtttatgttag
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TGCCACGCATGGGCTGTTTGACGTTTGTGTGAAAGCGACCGGTGACACACACATTGATGATCATCATACAAATGAAGATGTTGCACTTGCGCTCGGAACGgtaatccatcatagttttttggttaatcggttcatatttctatgcctatgagaaattgtattagcttggtgtattttacatacaatccaaaaaatgtgtt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86058153|gb|DR353910.1|DR353910EST: CATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACT GCTTTGTTAAAGGCACTTGGGGAACGGAAAGGGATTAACCGTTTTGGCGAT
genomic: CATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtg ... tttatgttagGCTTTGTTAAAGGCACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTgtaagtagtgaagtgcctttcctttgtctatctagtgagttaatagagtagcattctttggaagtttgtagttttgattgctattttttgtttatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG