1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtctttatttatttactatcccactagacttgaatggtagatgtttatttttgtccaagtcttattttaactctctaggggttttctcaatcttggtttgatgattaaaaagtgttcaaaatgcag
species | Arabidopsis thaliana |
transcript | AT4G14716.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|125245147|gb|EL259232.1|EL259232
genomic: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|125284364|gb|EL298449.1|EL298449
genomic: CTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: GAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|163988125|gb|EL994873.1|EL994873
genomic: GAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CGATGAGGATTTGAAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCEST: gi|164228522|gb|EL998400.1|EL998400
genomic: CGATGAGGATTTG-AAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCC
EST: CCGATGAGGATTTG-AAAAGATCCGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAA-GCTTCCAAACTAEST: gi|19874934|gb|AU235765.1|AU235765
genomic: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTA
EST: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|164133995|gb|ES128313.1|ES128313
genomic: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CGATGAGGATTTGAAAAAGTATCCGCGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAEST: gi|152035832|gb|BP862940.2|BP862940
genomic: CGATGAGGATTTGAAAAAG-ATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAA
EST: CCGATGAGGATTTGAAAAAGATACGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCC-GGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|125212665|gb|EL227619.1|EL227619
genomic: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAEST: gi|124807070|gb|EH893545.1|EH893545
genomic: CCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGA
EST: ATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|125099472|gb|EL155270.1|EL155270
genomic: ATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
genomic: CTCGTGGTTACTCTTACATGgtttgtggtc ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtctttatttatttactatcccactagacttgaatggtagatgtttatttttgtccaagtcttattttaactctctaggggttttctcaatcttggtttgatgattaaaaagtgttcaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT