1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttatatagacttgaatgctagatgtttacttttgaacaagtcttgttttaactctctagggttttactcaattgtaacacttactctactgaatgtatttaggaaaattcgttgatgatttgcaaattgttttatgtgcttgagtcttggtttgatgatggaaaagtgttcaaaatgcag
species | Arabidopsis thaliana |
transcript | AT4G14710.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|86074670|gb|DR370427.1|DR370427
genomic: TGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttat ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|86082287|gb|DR378046.1|DR378046
genomic: CCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttat ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGEST: gi|124743297|gb|EH834459.1|EH834459
genomic: CCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttat ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTG
EST: CCGATGAAGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATG GACTTTTGTGAGGCATGCCCGGAAAAGCTTCCAAACTATGAAGT
genomic: CCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttat ... caaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttatatagacttgaatgctagatgtttacttttgaacaagtcttgttttaactctctagggttttactcaattgtaacacttactctactgaatgtatttaggaaaattcgttgatgatttgcaaattgttttatgtgcttgagtcttggtttgatgatggaaaagtgttcaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT