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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtgtctatcgatatgttatacagttttatcgatatgattagttacgatgacataactgttttctcttccaatatgttttag

Basic information

species Arabidopsis thaliana
transcript AT4G14360.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G35120.4 (Glycine max), 5'ss of exon 3
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtgtctatcgat--atgttatacagttttatcgatatgattagttacgatgacataactgttttctcttccaatatgttttag
  ||||||||||  ||||| |||||||||| |||||| | |||||||||||| | || || || | ||||||||||||||| |||||    ||||| ||||||   ||      |   ||||     |  || ||||  |   | |   |||  ||| |||| | | |   |  |||||  ||
GATGAAGCTGGACCTGTCTGTGATGGAGCACTATGAAAGACATTGTCCTCCTGCGGAAAGGCGGTACAATTGCTTGATTCCTCCTCCATCAGGATACAAGgtgaaaatttgctaagagtatatgtgatcttcaatatactctctgatactgatgtaattgttgtttat---ataatgttgcag

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G32470.1 (Glycine max), 5'ss of exon 3
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtg----tctatcga-----tatgttat-----acagttttatcgatatg-attagttacgatgacataactgttttctcttccaatatgttttag
  ||||||||||  ||||| |||||||||| |||||  | |||||||||||| | || || || | ||||||||||||||| |||||   |||||| ||||||    | |    |     ||||| ||     |||        ||||   ||   |||   |     |||  || |   ||| |  |||||  ||
GATGAAGCTGGACCTGTCTGTGATGGAGCACTATGAGAGACATTGTCCTCCTGCAGAAAGGCGGTACAATTGCTTGATTCCTCCTCCATCTGGATACAAGgtgaaaatttgctaagagtatatgtgatcttcaacacaccctctgatacatatgtattattttagtccaacatttgttgtttctataatgttgcag

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G00550.1 (Glycine max), 5'ss of exon 2
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgt---------gtcta---tcgatatgttatacagtttta-----------tcgatatgattagtta-------cgatgacataactgttttctcttccaatatgttttag
| ||||||||||| | ||||||||||| || |||||  | |||||||||||| | || ||  |||| ||||| |||||||| |||||    ||||| |||||         | | |   ||||| || | | ||  || |           |  |||   ||   ||       | |||  | |||  || |   ||| |   ||||| ||
ACTGAAGCTGGATCTTTCTTTGATGGAACACTATGAGAGACATTGTCCTCCTTCAGAAAGGAGATTTAATTGTTTGATTCCTCCTCCGGCAGGATACAAGgtaaagaatatgccgagactcgatgtgatcttcaacttcaacatatcctcattaatacatttgtataattttgtcaatgctaaaacaattgttgtttctatggtgtttcag

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g03630.t01 (Vitis vinifera), 5'ss of exon 2
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtg----tctatcgatatgttatacagttttatcgatatgattagttacgatgacataactgttttctctt--ccaatatgttttag---------------------
 |||||| |||||||||||||||||||||| |||||  | ||||| || || ||||| || || |  |||||||||||||| |||||    || || ||||||    | |    |  | || |  | | ||      | |     |||   ||   | | | |   |   |  | || ||| ||                        
GTTGAAGTTGGATTTGTCTTTGATGGAGCACTATGAGAGACATTGCCCACCACCTGAAAGGCGCTATAATTGCTTGATTCCTCCTCCAGCAGGGTACAAGgtgagtctgtgcttaagttttttgaaatattgggaccaaggaagtttatattgttttcattatccacatgtacctaagatgattctcttctgctgtgggcggtaacag

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0049g01180.t01 (Vitis vinifera), 5'ss of exon 3
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtgtc--tatcgatatgttatacagttttatcgatat----gattagttacgatgacataactgttttctcttccaatatgttttag
||||||||||||| | |||||||||||||| |||||| | ||||| |||| ||||||||| || | ||||||||||||||| || ||    || || ||||||    | |   || | |  | |||   |  | | |    | ||  |||   |    |   | | ||| ||| ||           
ATTGAAGCTGGATCTTTCTTTGATGGAGCACTATGAAAGACATTGCCCTCTTCCTGAGAGGCGGTACAATTGCTTGATTCCTCCACCAGCAGGGTACAAGgtgagaatgtgcgtaagcttaatagtaacaagggtgttgaagttttcttatttttgtgtgtgtctcttcccttgcag----------

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S322_38V6.1 (Physcomitrella patens), 5'ss of exon 2
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtgtctatcgatatg---ttatacagttttatcgat----atgattagtt-acg-------atgacataactgttttctcttccaatatgttttag--------------------------------------------------------------
| |||||||| ||||||| |||||||||||||||||||| |||||||| ||   | |    ||  | |||||  | || || || |||      || |||||  || |  | ||    || || |  ||| || ||     || || ||| |||       | |||  ||     |  ||   || |      | |                                                              
ACTGAAGCTGAATTTGTCGTTGATGGAGCATTATGAACGGCATTGTCCGCCGAATCATCTCCGCCTGAATTGTCTCATCCCACCCCCTCCAAATTACAAGgta-ctgtgaacatccccttctaaaactttgtccatttatgtgcttggtttacgggaagtcaagacgaaataaggtattcaatcagtccacaatgggcacccaaccagcagctgtcatctcactcttgaattgatctattgtacaccattgagggaag

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S146_124V6.1 (Physcomitrella patens), 5'ss of exon 2
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtg--tctatcgatat-gttatacagttttatcgatatgattagttacgatgacata-actgtttt----ctcttccaatatgttttag------------
  |||||||| |||| || ||||||||||||||||| || |||||||| || |||||    ||  |||||||| | ||||| |||||       | |||||||  | ||   || | | | |   |   | ||  | | | | ||| || | || || ||     |    |    | || ||  |   |            
GCTGAAGCTGAATTTATCGTTGATGGAGCATTATGAGCGACATTGTCCGCCCCCTGATCACCGTCTCAATTGCCTCATTCCACCTCCGCCAAATTTTAAGgtgcttttaataatctcgctctgatgccctgtctgttttagt-gtttcgctcacgtagaccaaactaagacatacctaagatcatggggattacatcatta