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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGCTTGTATGGAAGTCATTTGCATATTTATCAATGGCCTGAAGGTGAAATGAAACAGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattacaccaacataaatgttgatgatctgtgttagtaaccaagtatgtaagcttattgggtttttgttgttatgtggttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G14040.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124777733|gb|EH867676.1|EH867676
EST:     TTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG                         ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
genomic: TTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: gi|124990805|gb|EL063074.1|EL063074
EST:     AGATAATTGACCTTGGAAATACCGGTCTCTTACCTTCTTGAG                         ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGC
genomic: AGATAATTGACCTTGGAAATACCGGTCTCTTACC-TCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGC
EST: gi|125266956|gb|EL281041.1|EL281041
EST:     ATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG                         ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
genomic: ATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: gi|125212121|gb|EL227075.1|EL227075
EST:     AAATGAAACAGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG                         ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
genomic: AAATGAAACAGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: gi|124718193|gb|EH809595.1|EH809595
EST:     AGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG                         ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
genomic: AGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: gi|124912772|gb|EH986760.1|EH986760
EST:     CTTACCTCTTGAG                         ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
genomic: CTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT