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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGGGCGAGATCTTGGTGTCCTGTCTTGGAGATGAAGAGGGGAATGCTAAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttattgcaaaacaaagcattttctgttttagtttcttgtcgctattagtcatatatcattgttggttattgtatcag

Basic information

species Arabidopsis thaliana
transcript AT4G14030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G00590.1 (Glycine max), 5'ss of exon 3
CCACGGGCGAGATCTTGGTGTCCTGTCTTGGAGATGAAGAGGGGAATGCTAAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttattgcaaaacaaagcatttt----ctgttt---tagtttcttgtcgctattagtcatatat----cattgttggttattgtatcag---------------------------------------------------------------------------------------------------
|  | || || ||  || | || |||||||||||| |||| || ||||||   || ||||| |||||||||||||| ||||| |||||  | |||   |||||      |  ||  || ||  || |    |||||     ||  || | |    |||  |  |   |    ||||    ||  ||  ||||                                                                                                    
CTTCTGGTGATATAATGATCTCGTGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatctagaagccagagttttgtaaaactgttaacacagaatcgtttaataattgcttgtgcgttgaacattacacgt-gttacatcattggccagaaacaattctatttgaaactacttacgtagttagtatttcgatatctaattttctaattatattatattgtatcctacttcacattgattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264420|gb|EL278505.1|EL278505
EST:     AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAG                         GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
genomic: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
EST: gi|86040919|gb|DR336674.1|DR336674
EST:     AAGGGGAATGGGTTTCTTCTTCTTGATTCTGATTTTAACATCAAGAATAG                         GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
genomic: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
EST: gi|125241683|gb|EL255768.1|EL255768
EST:     CTGATTTTAACATCAAGAATAG                         GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
genomic: CTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
EST: gi|47831973|gb|CK121657.1|CK121657
EST:     AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAG                         GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
genomic: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA