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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAGATTTTGGAAGAGCTTGGTGATGGTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTgtaagttgttgaaagtttctctctttcgcttatcttctagtgtgtagctgattctatctcaccttgtgttttcctcag

Basic information

species Arabidopsis thaliana
transcript AT4G13020.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164207875|gb|ES037088.1|ES037088
EST:     TTTGGAAACATATGAAGTT                         GTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
genomic: TTTGGAAACATATGAAGTTgtaagttgtt ... ttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
EST: gi|116381092|gb|EG423684.1|EG423684
EST:     GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTT                         GTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
genomic: GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTgtaagttgtt ... ttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
EST: gi|116427860|gb|EG470452.1|EG470452
EST:     GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTT                         GTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
genomic: GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTgtaagttgtt ... ttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG