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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGTATTACTCCGATGATTGGGCAACTAATGCTTCCAAGTTAGCTTTTGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaaattgaaacttcaacacatgtacagtatttatatatgtagttctctgtttgttgtatcataggagtatgaaagcttcagattatattttac...

Basic information

species Arabidopsis thaliana
transcript AT4G08520.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502441|gb|HO207981.1|HO207981
EST:     TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
EST: gi|125314242|gb|EL328327.1|EL328327
EST:     GAAAAATAATGTCTTCTCG-AAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: GAAAAAT-ATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
EST: gi|86024307|gb|DR320060.1|DR320060
EST:     TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAAATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
EST: gi|86024308|gb|DR320061.1|DR320061
EST:     TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAAATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
EST: gi|86024309|gb|DR320062.1|DR320062
EST:     TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAAATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
EST: gi|19875026|gb|AU235857.1|AU235857
EST:     TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
EST: gi|47828401|gb|CK118085.1|CK118085
EST:     TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAG                         CTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG
genomic: TGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACAGAAGgtaagatcaa ... ctttttgcagCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGG