Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTGCGGGAAGACTTTCTTTGATGTTAGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGgtttaataatatcctctctttggtttggcttacacactcactttcatgatatattgaagccatcttgtttttgttttttgtaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G06634.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G06634.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G13310.1 (Glycine max), 5'ss of exon 2
TGGTTGCGGGAAGACTTTCTTTGATGTTAGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGgtttaataatatcctctctttggtttg---gcttacacactcactttcatgatatattgaagccatcttgtttttgttttttgtaacag---------------
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TGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAACATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGATGGATGTGGAAAGgt--aatgattttaatacttacagatgcacacccatacaccagcatttattatatat--atgccattgtattgccaagttgtgaaatgataatttacattacta
upper sequence: AT4G06634.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G30150.1 (Glycine max), 5'ss of exon 3
TGGTTGCGGGAAGACTTTCTTTGATGTTAGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGgt-------ttaataatatcctctctttggtttggcttacacactcactttcatg-----atatattgaagccatcttgtttttgttttttgtaacag--
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TGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAACATTCTCACATCCATGGAGAGAGGCAGTATGTTTGTCACTACGATGGATGTGGAAAGgtagtggttttaatacttacagatgcacacccatacacatgtatttatatatacatatgtgtgtgtgtgtgccattgtattgccaagttgtgaaataata
upper sequence: AT4G06634.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv12s0035g00660.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTGCGGGAAGACTTTCTTTGATGTTAGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGgt--ttaataatatcctctctttggtttggcttacacactcactttcatgatatattgaagccatcttgtttttgttttttgtaacag------------
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AGGCTGTGGAAAGACCTTTATTGATGCTGGGGCTTTGAGGAAGCATTCACATATCCATGGCGAGAGACAATATGTTTGCCATTATGAGGGGTGTGGAAAGgtaatgtgttttaaccctttcatgttgttccttgcaaaatatagttgagattggtcagtaaattattttctttcataataaacaatacctactcaagaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164142816|gb|ES036870.1|ES036870EST: GAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAG AAATTTCTGGATAGTTCAAAGTTGAAGAGACA
genomic: GAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGgtttaataat ... tttgtaacagAAATTTCTGGATAGTTCAAAGTTGAAGAGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTGCGGGAAGACTTTCTTTGATGTTAGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAAGGATGTGGAAAGgtttaataatatcctctctttggtttggcttacacactcactttcatgatatattgaagccatcttgtttttgttttttgtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG