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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAAACAACGAGTTGGAGTTGGCTAAGCATTTTAAGAATGTGACTTCAAGTGATATTGACAAACTAACAATTTCGAATATCCCAGAAGGTTCAAATAGgtttgttccaccaatctcgagtgtgtgtgtgtgtgctttcaggtgctttaaaatgttggtttgaggtataaaatctcgagttacattgtattgatttttccag

Basic information

species Arabidopsis thaliana
transcript AT4G04340.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124860163|gb|EH944600.1|EH944600
EST:     GTGATATTGACAAACTAACAATTTCGAATATCCCAGAAGGTTTCAAATAG                         GTTTTGGGCTCATA
genomic: GTGATATTGACAAACTAACAATTTCGAATATCCCAGAAGGTT-CAAATAGgtttgttcca ... atttttccagGTTTTGGGCTCATA
EST: gi|124765425|gb|EH855555.1|EH855555
EST:     AGTGATATTGACAAACTAACAATTTCGAATATCCCAGAAGGTTCAAATAG                         GTTTTGGGCTCATATCATAA
genomic: AGTGATATTGACAAACTAACAATTTCGAATATCCCAGAAGGTTCAAATAGgtttgttcca ... atttttccagGTTTTGGGCTCATATCATAA