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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgtttttctaactcaatatgatcttgaggaaagataatcttttcaatcatgaatcaagttatgtcacttatctcaaagtggtatccttttgacaaaa...

Basic information

species Arabidopsis thaliana
transcript AT4G02620.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02620.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g57854.1 (Oryza sativa), 5'ss of exon 3
GACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgtttttctaactcaatatgatcttgaggaaagataatcttttcaatcatgaatcaag------ttatgtcacttatctcaaagtggtat-ccttttgacaaaa
||||| ||   ||| |||||| ||||||||||||| ||||||||  | ||||  |||||||||||||| || || |||   ||||  |      ||||   ||   |    | |     |||| ||| ||   |||  ||| |      ||||      ||| |  ||| || |   |   |||||   
GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgta-ataacctcaactttctaacgtgc-aaagctgtttaatttttccatcaatg--tcaggctgcttttattctgactatatataaggggaacatcgcgtgaca---

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G26580.1 (Glycine max), 5'ss of exon 3
GACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgtttttctaactcaatatgatcttgaggaaagataatcttttcaatcatgaatcaagttatgtcacttatctc-aaagtggtatccttttgacaaaa-----
|| ||||| |||||||||||| |||||||||| || |||||||||||| | |||||||||||||||||||| |||||||||||||||    |  ||||  || | | |||         || |||     |  |||  |    |||   | || |   | | | || | | ||| ||| |        
GATACTGTAGTTGGATTTTTGTTGGCTGGAGTGGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccactg-aactatatttta-cttactattctgtagtct----gagtatgtttggtattaatcccctaaaaactacaatgtttttcttgtgaaattgtacat

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G09570.1 (Glycine max), 5'ss of exon 3
GACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgtttttctaactcaatatgatcttgaggaaag-ataatcttttcaatcatgaatcaagttatgtcacttatctcaaagtggtatccttttgacaaaa-----
|| ||||| ||||||||| || |||||||||| || |||||||||||| | |||||||||||||||||||| |||||||||||||||    |  || |  ||||| |  | |  |     || |||    |    ||  |  |      | |   | |  | | || | | ||| ||| |        
GATACTGTAGTTGGATTTCTGTTGGCTGGAGTGGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccactg-aatt--atatgttactaactattctgtagtctgagtatcgttggttttaaccccctaa---aacctacaatgtttttcttgtgaaattgtacat

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0062g00210.t01 (Vitis vinifera), 5'ss of exon 3
GACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgtttttctaactcaatatgatcttgaggaaagataatcttttcaatcatgaatcaagttatgtcacttatct-caaagtggtatccttttgacaaaa-
|||||| |   ||| |||||| |||||||||| |||||||||||| |  |||| ||||||||||| ||||| || || ||||||| ||||  | |  | | | ||||| |   | |  |||   |  | |  | | | |  | | |  |      |   || |  | |||   |   |  |   
GACACTATAACTGGGTTTTTGCTGGCTGGAGTGGGTAATGTTGACTTGCGGAGAAAGACAAATTATCTCATTGTTGACTCAAgtacgttta-cgagtttagt-tgatcctagagtattataggttgcttatcctttagttgattgaatttttaggttaacataaagatataaatcaaattagct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86018446|gb|DR314192.1|DR314192
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018455|gb|DR314201.1|DR314201
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|164080072|gb|ES059831.1|ES059831
EST:     TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|164025326|gb|ES107382.1|ES107382
EST:     TAAGGAGGAAGACAAATTACCTCATCGTGGTATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTT-CAAGGAATTCTCAGCAAGG
genomic: TAAGGAGGAAGACAAATTACCTCATCGTGG-ATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGG
EST: gi|86018467|gb|DR314213.1|DR314213
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|124784773|gb|EH874480.1|EH874480
EST:     GTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATT
genomic: GTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATT
EST: gi|86018442|gb|DR314188.1|DR314188
EST:     TGGTMATGTTGACATMAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018460|gb|DR314206.1|DR314206
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018443|gb|DR314189.1|DR314189
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018454|gb|DR314200.1|DR314200
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018463|gb|DR314209.1|DR314209
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018451|gb|DR314197.1|DR314197
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|125127352|gb|EL172240.1|EL172240
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGG
EST: gi|125257635|gb|EL271720.1|EL271720
EST:     CAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAACGG
genomic: CAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAA-GG
EST: gi|125113717|gb|EL164434.1|EL164434
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAA
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAA
EST: gi|86018447|gb|DR314193.1|DR314193
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018456|gb|DR314202.1|DR314202
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018466|gb|DR314212.1|DR314212
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|125041829|gb|EL114098.1|EL114098
EST:     TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTACTCAGCAAGG
genomic: TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATT-CTCAGCAAGG
EST: gi|124852176|gb|EH936613.1|EH936613
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAG
EST: gi|86018458|gb|DR314204.1|DR314204
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|125112834|gb|EL163874.1|EL163874
EST:     CAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: CAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018457|gb|DR314203.1|DR314203
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018461|gb|DR314207.1|DR314207
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|124793610|gb|EH883289.1|EH883289
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAG
EST: gi|125009321|gb|EL081590.1|EL081590
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018462|gb|DR314208.1|DR314208
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018450|gb|DR314196.1|DR314196
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018444|gb|DR314190.1|DR314190
EST:     TGGTAATGTTGACATAAGGAGG-ATACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|125016349|gb|EL088618.1|EL088618
EST:     AGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: AGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018453|gb|DR314199.1|DR314199
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86075878|gb|DR371635.1|DR371635
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|164062852|gb|ES117891.1|ES117891
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTG
EST: gi|124998995|gb|EL071264.1|EL071264
EST:     CGTGGATTCAA                         AGACAGCTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: CGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018449|gb|DR314195.1|DR314195
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018464|gb|DR314210.1|DR314210
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|124860290|gb|EH944727.1|EH944727
EST:     ATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: ATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018452|gb|DR314198.1|DR314198
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018459|gb|DR314205.1|DR314205
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|124897637|gb|EH973851.1|EH973851
EST:     ACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: ACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018448|gb|DR314194.1|DR314194
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|47828671|gb|CK118355.1|CK118355
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|86018445|gb|DR314191.1|DR314191
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: gi|125197817|gb|EL212771.1|EL212771
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAA
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAA
EST: gi|86018465|gb|DR314211.1|DR314211
EST:     TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA                         AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgtttttctaactcaatatgatcttgaggaaagataatcttttcaatcatgaatcaagttatgtcacttatctcaaagtggtatccttttgacaaaa

- - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctaactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggaaa
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