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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAGgtaaataagtaaatgagtttttcctttacatgtaatgatcagattttggaaaattgtgaaatttaaagagagatttgttattttatgatatttttggtag

Basic information

species Arabidopsis thaliana
transcript AT4G02290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02290.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 4
GTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAGgtaaataagtaaatgagtttttcctttacatg-taatgatcagatt--ttggaaaattgtgaaatttaaagagagatttgttattttatgatatttttggtag
|| ||    ||||| || || ||||| ||| | || ||    |  || |||||| |||| || || || |||||||||||||||||||||||||||||     || ||    || | | |   || |  || |||| ||  |||||  |     ||   | |    |  | | ||  |  || ||  || ||||||
GTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGgtaaagtttcaactg----ttccatatgagtgatgttgttcagtttagttggatgagacataatcattactcaaattcttttgatgaataattattatggtag

upper sequence: AT4G02290.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G37420.1 (Glycine max), 5'ss of exon 4
GTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAGgtaaataagtaaatgagtttttcctttacatgtaatgatcagattttggaaaattgtgaaatttaaagagagatttgttatttta-tgatatttttggtag--------
|||||    ||||| || ||||| || ||| | || ||    || || || || | ||| || || || ||||| |||||||||||||||||||||||    ||| |   |||||   || |||   | | |  ||| |  |||    ||  ||  |||||  |||  |||| | ||| ||||  |||||  |         
GTTTTCCAGTTTGCCGATAAATATAGGGGACCCTACAGCAATGGCTTGAAGCCCGTTGTGTGCCCCTTCTATTGTTCTTACTCTGGTTATCAGgtaaagttctaatttcttttttaagttccat---aggttttgatgtgtgaa----gtataaagtaaagcaagaagtgttttcttaatgatgattttgtaaatctgtcag