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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAGgtgagtcgcagctgcagtcgtttttttttggatatattgatagttactagtttgatgtatttgttaacttgcttttgctgtttacttctgcaatgtgttttag

Basic information

species Arabidopsis thaliana
transcript AT4G02150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02150.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 3
AACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAGgtgagtcgcag-ctgcagtcgtttttttttggatatattgatagttactagtttgatgtatttgttaacttgcttttgctgtttacttctgc-aatgtgttttag
|||  | |||||| |||||||||||| ||||||||||||||||||||||  | ||  |||| |||  |||||||||||||||  | ||||||||  |    || |||        | ||||| |||  ||| | |   |  | ||  |||    | ||   ||| ||||| | ||||||  |   ||| |  |||||
AACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAGgtttgaactaggctgtttattcctgtttttagatccatttaaatgaagcatttatatgctcctctt---ttg-ttttgttatttactgatttgaattttatttag