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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttatagataaaacttcatgtgaaccatttattcatttagatgtcagcgaatctgattatctagcagttttcatttttgttctagtgcacccttaatgctttagattttatgcttttag

Basic information

species Arabidopsis thaliana
transcript AT4G01690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G039396_T01 (Zea mays), 5'ss of exon 3
GGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttatagataaaacttcatgtgaaccatttattcatttagatgtcagcgaatctgattatctagcagttttcatttttgttctagtgcacccttaatgctttagattttatgcttttag
|| || ||||| || ||||||||||| || || || |||||||||| |||||| ||||||||||| ||||| || || || ||||||    |||| |           ||||      || ||  ||  |  | | || | |   |     |||| | || |  |     | ||    ||  |  |  | | ||               
GGCCGCGAAGAGTCAGTGGAGGAGTTCGTGCGCCGCAACCTCGGTGCTGAGGTCTTTGAGCGCCTCATTGAGCCTTTCTGCTCAGgtgc--ttattg--------cagtgtgttattgttgtttgttctg--gcctgctacttgcagcggttagccgattaccataagaatttaaca-actttgtaaacctaag---------------

upper sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G27890.1 (Glycine max), 5'ss of exon 3
GGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttatagataaaacttcatgtgaaccatttattcat-ttagatgtcagcgaatctgattatctagcagttttcatttttgttctagtgcacccttaatgctttagattttatgcttttag
|||| ||| ||||| || || |||||||| || || ||||| ||||||||||||||||| ||  |||| || || |||||||||||| |    || ||      | |           |||||| | |||      | | || ||  |  | |    || ||  ||||||  | || | |   | |                        
GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattat-gtgttactttttgacccaggg-atattcag-----------------------

upper sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 3
GGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttatagataaaacttcatgtgaaccatttattcatttagatgtcagcgaatctgattatctagcagttttcatttttgttctagtgcacccttaatgctttagattttatgcttttag
| || ||| |||||||| || |||||||| || ||||| || ||||||||||||||||| |||||||| || || ||||||||||||       ||   |    || ||||       |||  |  | |  | |||  |   |    ||    | | | |  | || |  |  | | | |   ||||   | | |||            
GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgc-----taatcagtttttgatgtt-----cttagcctatcacgtatca-tgctgcattctactgggaattataaagttatacttaaatac-ctgctaatttatcatatt------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124980297|gb|EL053259.1|EL053259
EST:     TAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAG                         GTGTTTATGCTGGTAGATCCTTCAAAACTGAGCATGAAAGC
genomic: TAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttat ... atgcttttagGTGTTTATGCTGGT-GATCCTTCAAAACTGAGCATGAAAGC