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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacctttaaatctctatatgagcaacaacaatctaatgatgatgattaatcattttgttcttaaaaacttgtgtgtatgttacag

Basic information

species Arabidopsis thaliana
transcript AT4G01610.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125047692|gb|EL119961.1|EL119961
EST:     CTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAA
genomic: CTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAA
EST: gi|86059238|gb|DR354995.1|DR354995
EST:     AACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
genomic: AACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: gi|124973355|gb|EL046993.1|EL046993
EST:     CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAA
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAA
EST: gi|125032264|gb|EL104533.1|EL104533
EST:     ATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAAGAAGCA
genomic: ATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAA-GAAGCA
EST: gi|124961988|gb|EL036444.1|EL036444
EST:     CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGT
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGT
EST: gi|125002550|gb|EL074819.1|EL074819
EST:     AAAGCTGCTNTAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAAGAAGCA
genomic: AAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAA-GAAGCA
EST: gi|125061657|gb|EL130296.1|EL130296
EST:     CGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
genomic: CGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: gi|164007784|gb|ES107324.1|ES107324
EST:     CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
EST: gi|125058223|gb|EL127097.1|EL127097
EST:     CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: gi|125321081|gb|EL335166.1|EL335166
EST:     CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
EST: gi|301501566|gb|HO207106.1|HO207106
EST:     CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT                         GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacctttaaatctctatatgagcaacaacaatctaatgatgatgattaatcattttgttcttaaaaacttgtgtgtatgttacag

- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT