1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacctttaaatctctatatgagcaacaacaatctaatgatgatgattaatcattttgttcttaaaaacttgtgtgtatgttacag
species | Arabidopsis thaliana |
transcript | AT4G01610.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATEST: gi|125047692|gb|EL119961.1|EL119961
genomic: AACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: CTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAEST: gi|124973355|gb|EL046993.1|EL046993
genomic: CTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAA
EST: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAEST: gi|125032264|gb|EL104533.1|EL104533
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAA
EST: ATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAAGAAGCAEST: gi|301501566|gb|HO207106.1|HO207106
genomic: ATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAA-GAAGCA
EST: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATEST: gi|124961988|gb|EL036444.1|EL036444
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTEST: gi|125002550|gb|EL074819.1|EL074819
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGT
EST: AAAGCTGCTNTAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAAGAAGCAEST: gi|125061657|gb|EL130296.1|EL130296
genomic: AAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAA-GAAGCA
EST: CGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATEST: gi|164007784|gb|ES107324.1|ES107324
genomic: CGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAEST: gi|125058223|gb|EL127097.1|EL127097
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
EST: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATEST: gi|125321081|gb|EL335166.1|EL335166
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCAT
EST: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
genomic: CAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacct ... tatgttacagGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTgtaaaaacctttaaatctctatatgagcaacaacaatctaatgatgatgattaatcattttgttcttaaaaacttgtgtgtatgttacag
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT