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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCCAAATGTTGTCTATAAAGGGAAATTGGAGAACCAAAAGAAGATTGCTGTCAAGCGTTTTACTAGAATGGCCTGGCCTGATTCACGACAGTTCTTGgtatgttcttatctttggaaattgtagtttgtttcatctctttttattttgatgttgagaatgtgttcttcttccttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT4G00710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 3
GGCTCCAAATGTTGTCTATAAAGGGAAATTGGAGAACCAAAAGAAGATTGCTGTCAAGCGTTTTACTAGAATGGCCTGGCCTGATTCACGACAGTTCTTGgtatgttcttatctttggaaattgtagtttgtttcatct--ctttttattttga----tgttgagaatgtgttctt----cttccttgtgcag--------
||||||||||||||| |||||||| || |||||||| |||| || ||||||||| ||||| |||| ||| |  || ||||||||| | || ||||| ||||||  |||    |     || | ||   || ||  | ||  || || | | | |    |  ||   |  ||||| |     | | |||  |||        
GGCTCCAAATGTTGTTTATAAAGGAAAGTTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGGAATGCTTGGCCTGATGCTCGGCAGTTTTTGgtaaattcac-ccgccccaattggtttcttcttcaaccttgctcttaactatcaattctcctgtagacctgttcatgaccttgcattgcacagatgcatta

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 3
GGCTCCAAATGTTGTCTATAAAGGGAAATTGGAGAACCAAAAGAAGATTGCTGTCAAGCGTTTTACTAGAATGGCCTGGCCTGATTCACGACAGTTCTTGgtatgtt--cttatctttggaaattg------tagtttgtttcatctctttttattttgatgttga-gaatgtgttcttcttccttgtgcag--------
||||||||||||||| |||||||| ||  ||||||| |||| || ||||||||| ||||| |||| ||| |  || ||||| ||| | || ||||| ||||||  ||  | |  |  |     ||       ||   |   || |  || |  ||| |  |||| | ||   ||   | ||    ||             
GGCTCCAAATGTTGTTTATAAAGGAAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGGAATGCTTGGCCAGATGCTCGGCAGTTTTTGgtaaattcacctgcccctattggttacttctttaaccttgctcttaactctcaattctcgtgttcatgagcttgcattgctcaaatgcattattgtattt

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 3
GGCTCCAAATGTTGTCTATAAAGGGAAATTGGAGAACCAAAAGAAGATTGCTGTCAAGCGTTTTACTAGAATGGCCTGGCCTGATTCACGACAGTTCTTGgtatg-----ttcttatctttggaaattgtagttt---gtttcatctctttttattttgatgttgagaatgtgttcttc-ttccttgtgcag--------
|||||| || ||||| |||||||||||  | |||||||| | ||  |||||||||||||| ||||  ||| |||| ||||||||| | ||||| |||| ||||       | ||| | |     ||   |  |          | | |  |    | |    ||  |  | | |||||| || |  | |           
GGCTCCGAACGTTGTGTATAAAGGGAAGCTAGAGAACCAGAGGAGAATTGCTGTCAAGCGCTTTAACAGAGTGGCTTGGCCTGATGCCCGACAATTCTCGgtaaaggaattccttctttccaataaccctcatgccaaacccaacccccctcccctcttcctttttgtttctcttcttcatttcaggagttcttaaattg