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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAGCTCAAATCTACTTGCTTCTGGGGCTGATGATGGTGAAATTTGCATTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAGgtataccaccacttcttactagtcaacaaccttggtttttgtattaccttttactctcattattgctttggtataaacccatgagtaactttatgcgagggtcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G63460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 3
TATCAGCTCAAATCTACTTGCTTCTGGGGCTGATGATGGTGAAATTTGCATTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAGgtataccaccacttcttactagtcaacaaccttggtttttgtattaccttttactctcattattgctttggtataaacccatgagtaactttatgcgagggtc------ttttgcag--------------------------
 ||     ||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||  | || |||||||| ||| | |||||||||| ||| |||||    ||    || ||||   | |     | || |   |  |||  |   | || | ||   |   |  |  | || |    | || || | |  |    |       |||| ||                           
CATTGCACCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTCAATCCTTCAGAACCTACACATTTTCCACCGCTAAAGgt----cagagattgttacct-tgagtgtgcatgttacatacatttgcccctgctttgatggattaatatgccttaatcttcaaatatctgtctctgtaaattactaaattttacatagttagtgtatatgataatggtgcag

upper sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 3
TATCAGCTCAAATCTACTTGCTTCTGGGGCTGATGATGGTGAAATTTGCATTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAGgtataccaccacttctt-------actagtcaacaaccttggtttttgtattaccttttactctcattattgctttggtataaacccatgagtaactttatgcg---agggtcttttgcag-----------------
 ||     ||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||  | || |||||||| ||| | ||||||||||  || |||||     |    | | |        |  || |   || || |    ||  ||      |       || |    ||   |||      |  |||| || ||      |   | ||| |                    
CATTGCACCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTCAATCCTTCAGAACCTACACATTTTCCACCACTAAAGgtcagagattgttcccttgagtgtgcatgttacagacatttgcccctgctttgatggattaatatgttttaatcttcaaatatctgtctctgtaaattaataaatttaaaatatttagtgtatatgataatggtgcag

upper sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 3
TATCAGCTCAAATCTACTTGCTTCTGGGGCTGATGATGGTGAAATTTGCATTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAGgtataccaccacttcttactagtcaacaaccttggtttttgtattaccttttactctcattattgctttggta-taaacccatgagtaactttatgcgagggtcttttgcag
 ||     |||| |||||||||||||| |||||||| || || |||||||||||||| ||   |   ||| |||| ||||||||||||||||  ||||||||| |    |      |  |   |||     |||    || |||   | ||      || | ||  || || | |   ||  | ||||  || || | |   | |       
AATTGCACCAAACCTACTTGCTTCTGGAGCTGATGAAGGCGAGATTTGCATTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtcctcctctgatgcacaatttatttgaaaattatatcttcctt---ctacaatgttttttaggaacttctcctctaagta--ttcataccaatctgt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116440744|gb|EG483336.1|EG483336
EST:     TTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAG                         GGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTTTATATCGTGGAATAGA
genomic: TTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAGgtataccacc ... tcttttgcagGGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTTTATATCGTGGAATAGA