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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCTCGAGCATTCTCCTGCAATTACCCTAACCGAGCCGCAAAGCTTCTCAAGGCATTGAATGGAAACTTCCGGAACCATCCTTGTCTGAATAACCAGgtaaaaatgtgaaaaacatcttaagctgtttgcttcagatcgttgtttcttggcttactctgtttggcttattctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G62590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G62590.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g01240.t01 (Vitis vinifera), 5'ss of exon 5
TGTTCCTCGAGCATTCTCCTGCAATTACCCTAACCGAGCCGCAAAGCTTCTCAAGGCATTGAATGGAAACTTCCGGAACCATCCTTGTCTGAATAACCAGgtaaaaatgtgaaaaacatcttaagctgtttgc----ttcagatcgttg------tttcttggcttactctgtttggcttattctgcag---
||| ||||| |||||||| |||||||| ||||  |  |  ||| |||| ||||||||  | ||||| || || ||||| ||||||||||||||||||||||||  |     |  |   |    |  ||| |      | |  |    ||      |    || | |   |  | ||| || || | |     
TGTGCCTCGGGCATTCTCTTGCAATTATCCTAGGCATGTAGCAGAGCTACTCAAGGCTGTTAATGGGAATTTTCGGAATCATCCTTGTCTGAATAACCAGgtactatctccattactctaaggacttgtatatggggtccgaaaatatgaaaaattaaactgacattgccaatgtggatttttgtactacag