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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgtattcatcatacccttttcggggttaatcggtgttgcatttattctgcaagtgatttctatgctttcttctcgtag

Basic information

species Arabidopsis thaliana
transcript AT3G62360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 3
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgtattcatcatacccttttcggggttaatcggtgttgcatttattctgcaagtgatttctatgctttcttctcgtag------------------------------------------------------------------------------------------------------
||||||||    ||  | ||||| ||||| || || || || ||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||| |   |||  |     |  | ||| |||   ||  |    || || | |  |  ||| | |    |                                                                                                        
GTTGAGCTGTGTACTATTGATGGTTTGGTTAAGGAAAGCACTCAGTGTGCCCCTAATGGATACTATTTTATCCCAGTCTATGACAAGgtattgatcttgtgcttagcatttattttgggttttggccttgat----aaatgctctggaaacttccgtaaaattaagaaagaaaacataactagatgaccttattactctgacaagattctcagcattatcatatggaagataatattctgttctttttgttgttttcacgccacag

upper sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G014788_T01 (Zea mays), 5'ss of exon 3
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgtattcat------catacccttttcggggttaatcggtgttgcatttattctgcaagtgatttct--atgctttcttctcgtag----------------
||||||||    || || ||||| ||||| ||||| || ||||||||||| || ||||| |||||||| ||||| || ||||| |||||||   |        |      ||  |   |      | ||  || | |||| ||  | ||||    || |  | || | | |                 
GTTGAGCTCTGCACTGTTGATGGTTTGGTTAAAGAAAGCACACAGTGTGCTCCTAATGGATACTATTTTATCCCCGTCTATGATAAGgtatctttgtgttttttgtttactttagttctggattatcttttatgtgttct-cattttatttacacatacaattttattgcaagtaggagcaaaggtta

upper sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgta---ttca-------tcatacccttttcgg-------ggttaatcggtgt-tgcatttattctgcaagtgatttctatgctttcttctcgtag-----------------------------------------
|||||||||||||| || |||||| ||||||| || || ||||| ||||| |||||||| |||||||| || ||||||||||||||||||    | |       |  | | | |||  |       ||  ||    ||| | |||  || | | | |  || | ||||| ||      | |                                          
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctcaatgcaattattttcattccag

upper sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgta---ttca-------tcatacccttttcgg-------ggttaatcggtgt-tgcatttattctgcaagtgatttctatgctttcttctcgtag----------------------------------------
|||||||||||||| || |||||| ||||||| || || ||||| ||||| || ||||| |||||||| || ||||||||||||||||||    | |       |  | | | |||  |       ||  ||    ||| | |||  || | | | |  || | ||||| ||      |                                           
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctcaatgcaattattttcattacag

upper sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgtattcatcatacccttttcggggttaatcggtgt---tgcatttattctgcaagtgatttctatgctttcttctcgtag--------------------
||||||||||  ||| | ||||||||||| || ||||| || ||||||||||||||||||||||||||||| || || ||||||||||||||  | | ||  |  |  || | | || |  |   ||  |  |   || |  ||  |   ||   |   |  | |                      
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctctcatcaataactaacatttcaatcaaacaaagaagtaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415210|gb|EG457802.1|EG457802
EST:     GTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAG                         GGCTCATTCATTCTCAAGATAAATGGACCTGACGGATGGTCATGGAATCCA
genomic: GTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgtattcatca ... cttctcgtagGGCTCATTCATTCTCAAGATAAATGGACCTGACGGATGGTCATGGAATCCA