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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAgcaagtttaatctttcttttctttctttggcgtatatacattattatttttgttgatctctctaatcatagattcttgtttaaaagtgttaacag

Basic information

species Arabidopsis thaliana
transcript AT3G61080.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61080.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G08570.1 (Glycine max), 5'ss of exon 4
GAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAgcaagtttaatctttcttttctttctttg-gcgtatatacattat---tatttttgttgatctctctaatcatagattcttgtttaaaagtgttaacag
   |||||||||  |||||||||| | ||||||||||||| | |  ||||||||||||||| | || |||||||| || || ||  | || |  ||  |  |     ||    || |  | ||  ||||  | ||    |||  | || ||     ||     |   || ||| |   |  |||      
-CATATTGGACCATCCATGTTTGAAGCAGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCGGGACTATCCGTGTACCTAAGCCCTATAAGgtgagaatgcttaccattagtgttgtgagagctaatatttactagttatatcatggtggagggaacttgagttgacttgttgctaggagttgtag----

upper sequence: AT3G61080.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G01960.1 (Glycine max), 5'ss of exon 3
GAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAgcaagtttaatctttcttttctttctttggcgtatatacattattatttttgt--tgatctctctaatcatagatt-cttgtttaaaagtgttaacag
||||||||||||  |||||||||| |  |||||||||||| | |  ||||||||||||||| | || |||||||| || || ||  | || |  ||  |    ||    ||  |  | ||    |||    ||| || || | |  || |      ||    || |  ||||||   | | |||   ||
GAGTATTGGACCATCCATGTTTGAAGCTGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCGGGACTATCCGTGTACCTAAGCCCTATAAGgtgagaatg--tttaacattagtgttgtgagagatactatttactagttatatcatggtggagggaacttgagttgacttgttgctaggagttg-tag

upper sequence: AT3G61080.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 3
GAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAgc---aagtttaatctttcttttctttctttggcgtatatacattattatttttgtt-gatctctctaatcatagattcttgtttaaaagtgttaacag
|||||| || ||  | ||||||||||| ||||||||||||||||  ||||||||||| |||| | |||||||||| ||||  |||   || |    ||||||     |   |   | | ||   | |  ||| ||    ||   ||   ||    | |||   | || |     ||   | |  |  |||
GAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtttgggggtcactagatctattcatcctg-atatatctacatagctgacagaaaaatgtaa--gtggact---agttgctactccttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125116818|gb|EL166206.1|EL166206
EST:     AGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA                         GCTGGGGAATTGCCAACAGGTGGATCTTATATCATCATGGAGTTTATAGAT
genomic: AGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAgcaagtttaa ... gtgttaacagGCTGGGGAATTGCCAACAGGTGGATCTTATATCATCATGGAGTTTATAGAT