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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAATTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttgtcatcatttctctttgttaacttttctaactcagtgttcatcttccatatttgggtggtccgtggttgacatgatttctgtgattcattg...

Basic information

species Arabidopsis thaliana
transcript AT3G61050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G09070.1 (Glycine max), 5'ss of exon 3
AGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAATTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttgtcatcatttctctttgttaacttttctaactcagtgttcatcttccatatttgggtggtccgtggttgacatgatttctgtgattcattg
|| ||| || ||||| || || || ||||  ||||| ||||||||||||||||||||||||||||| ||| | |||||||| ||||| | || |||||||||   | ||| |||  |||  |   ||  || | | ||    ||| |  ||  |  |  | ||  |    | |  |||    |  || |           
AGCTGACATTAAACTCCTTGGATCCCTTAATAGAGATGATTTGAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGgtgg-atttgacatagttttacacagtgcacctat-tattctagtatg-attgtgta-gtgtgtataactcttccttgcatgggcttttacag-------

upper sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G02370.2 (Glycine max), 5'ss of exon 2
AGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAATTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttgtcatcatttctctttgttaacttttctaactcagtgttcatcttccatatttgggtggtccgtggttgacatgatttctgtgattcattg
|| ||| || ||||| || || || |||| |||||| ||||| ||||||||||||||||||||||| ||| | |||||||| ||||| | || |||||||||   | |||  || ||||      ||  || | | ||  | ||| |  ||  |  |  | ||  ||   | |  |||    |  || |           
AGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGgtgg-atttgaaataattttatacagtgcacctat-tattttagtatg-attgtgta-gtgtgtatgactcttccttgcatgggcttttacag-------

upper sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G45720.1 (Glycine max), 5'ss of exon 2
AGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAATTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtacta--cttgtcatcatttctctttgttaacttttctaactcagtgttcatcttccatatttgggtggtccgtggttgacatgatttctgtgattcattg
|||||| || || || || || || |||| |||||| ||||| |||||||||||||| |||||||| ||| |||||||||| ||||| | || ||| |||||   |  | ||||     || |  ||  | |  ||||||    |||| |      |     |    |  | |   ||| |   | | | | | |||     
AGTTGACATTAAGCTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGgtgagagtcctgtccgttattgtgattacttagctttctacagaagtgatttgacacagctctcctattattc-cagttaatccg-tatatattattggcaa

upper sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0048g01410.t01 (Vitis vinifera), 5'ss of exon 3
AGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAATTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttgtcatcatttctctttgttaacttttctaactcagtgttcatcttccat--atttgggtggtccgtggttgacatgatttctgtgattcattg---
||||||||| ||||| || || || |||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||| || || |  | |||||||||  ||   || | | |||   | | ||   || | || ||||   ||  |  || ||  | |   |  | |  || | ||  |   ||   |  |    |    
AGTTGATATAAAACTCCTTGGATCCCTTAACAGAGAAGATTTGAAGAAAATTTGTGGTGATAATTTTCCTGAATGGATATCTTTCCCTGTGTATGAACAGgt--tagccgttagcttttaattatttt---ttctttatctcaaaattatttgtcaattcactaatgaagcctttgatggaattctctttcctactctgctctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380658|gb|EG423250.1|EG423250
EST:     TTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAG                         GTCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG
genomic: TTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttg ... tttttttcagGTCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG
EST: gi|125196422|gb|EL211376.1|EL211376
EST:     TTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAG                         GTCAAATGGCTGAATAAACTACTGAGCAAGATGT
genomic: TTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttg ... tttttttcagGTCAAATGGCTGAATAAACTACTGAGCAAGATGT
EST: gi|19874467|gb|AU235298.1|AU235298
EST:     TTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAG                         GTCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG
genomic: TTTGTGGTGATAATTTCCCTCAATGGATATCGTTTCCAGCATTTGAACAGgtactacttg ... tttttttcagGTCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG