Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaactttggtcgtttgatcaattatctttcatccttcgcagtattagaaaatgatgaaagacttgtgtaagagtgttttctctgtgtttggtttccttcag

Basic information

species Arabidopsis thaliana
transcript AT3G60820.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60820.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G39420.1 (Glycine max), 5'ss of exon 3
AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagtt--aaactttggtcgtttgatcaattatctttcatccttcgcagtattagaaaatgatgaaagacttgtgtaagagtgttttctctgtgtttggtttccttcag
 || || |    |||  || |||| |||||||| || |||||||| |||||||||||||||||| |     | || || |||||||||   ||||||    |      | | |  |  ||     |||      || |    || | | |   ||    |  |   | |||| |   |||  | || |    
GGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaaaacttaaaacaacaacttagtagtgcttgtgaattct-----tttggggttgcttagaatgttacaaactacaatattctat---tttaatctcttgg--

upper sequence: AT3G60820.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G39420.3 (Glycine max), 5'ss of exon 1
------------------AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagtt--aaactttggtcgtttgatcaattatctttcatccttcgcagtattagaaaatgatgaaagacttgtgtaagagtgttttctctgtgtttggtttccttcag
                   || || |    |||  || |||| |||||||| || |||||||| |||||||||||||||||| |     | || || |||||||||   ||||||    |      | | |  |  ||     |||      || |    || | | |   ||    |  |   | |||| |   |||  | || |    
TATTGTTTCGCCTGACAGGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaaaacttaaaacaacaacttagtagtgcttgtgaattct-----tttggggttgcttagaatgttacaaactacaatattctat---tttaatctcttgg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86020247|gb|DR315993.1|DR315993
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020231|gb|DR315977.1|DR315977
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020240|gb|DR315986.1|DR315986
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020259|gb|DR316005.1|DR316005
EST:     TCCAGGCTGATGTGAAAGCTT-GCAGAAGGTTCTCAAATCCAGWCACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCSCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020241|gb|DR315987.1|DR315987
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|163990881|gb|ES042285.1|ES042285
EST:     GGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATG
genomic: GGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATG
EST: gi|86020260|gb|DR316006.1|DR316006
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|164161450|gb|ES206196.1|ES206196
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         AATCTATCAACATCAGCATAACAAGCA
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagA-TCTATCAACATCAGCATAACAAGCA
EST: gi|86020257|gb|DR316003.1|DR316003
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020242|gb|DR315988.1|DR315988
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020253|gb|DR315999.1|DR315999
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020227|gb|DR315973.1|DR315973
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020263|gb|DR316009.1|DR316009
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020238|gb|DR315984.1|DR315984
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020249|gb|DR315995.1|DR315995
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020258|gb|DR316004.1|DR316004
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020267|gb|DR316013.1|DR316013
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020229|gb|DR315975.1|DR315975
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020239|gb|DR315985.1|DR315985
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCCA
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCC-A
EST: gi|86020248|gb|DR315994.1|DR315994
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020243|gb|DR315989.1|DR315989
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020234|gb|DR315980.1|DR315980
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020262|gb|DR316008.1|DR316008
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020255|gb|DR316001.1|DR316001
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|116445800|gb|EG488392.1|EG488392
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020245|gb|DR315991.1|DR315991
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020236|gb|DR315982.1|DR315982
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020244|gb|DR315990.1|DR315990
EST:     CCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: CC-AGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020254|gb|DR316000.1|DR316000
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020230|gb|DR315976.1|DR315976
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020246|gb|DR315992.1|DR315992
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020264|gb|DR316010.1|DR316010
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|164233976|gb|ES059122.1|ES059122
EST:     GGCTGATGTGAAAGC-TTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATG
genomic: GGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATG
EST: gi|86020265|gb|DR316011.1|DR316011
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020269|gb|DR316015.1|DR316015
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020261|gb|DR316007.1|DR316007
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020266|gb|DR316012.1|DR316012
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020233|gb|DR315979.1|DR315979
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020256|gb|DR316002.1|DR316002
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020232|gb|DR315978.1|DR315978
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020268|gb|DR316014.1|DR316014
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTWTCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020228|gb|DR315974.1|DR315974
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
EST: gi|86020252|gb|DR315998.1|DR315998
EST:     TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG                         ATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG
genomic: TCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaa ... tttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTGgtgagttaaactttggtcgtttgatcaattatctttcatccttcgcagtattagaaaatgatgaaagacttgtgtaagagtgttttctctgtgtttggtttccttcag

- - - - - - - - - - - - - - - - - -  GCTGAT