1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCTGAGCTGTTGAGGAAAGGTCATAGTCGTTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgttctattcttgaggtccctgtgtttttcttttactttggctgttttgctcgacaggtgtattatgttttttatctattacag
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAG ATGGAAGGTTTTTGTGTTTTCTCTCCEST: gi|116411244|gb|EG453836.1|EG453836
genomic: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgttctatt ... tctattacagATGGAAGGTTTTTGTGTTTTCTCTCC
EST: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAG ATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAAGEST: gi|164140690|gb|ES006084.1|ES006084
genomic: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgttctatt ... tctattacagATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAAG
EST: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAG ATGGAAGGTTTTTGTGEST: gi|116422564|gb|EG465156.1|EG465156
genomic: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgttctatt ... tctattacagATGGAAGGTTTTTGTG
EST: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAG ATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAAG
genomic: TTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgttctatt ... tctattacagATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGAGCTGTTGAGGAAAGGTCATAGTCGTTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgttctattcttgaggtccctgtgtttttcttttactttggctgttttgctcgacaggtgtattatgttttttatctattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA