1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGTGCCTTGTGGGGAAAGCTCGCATCTGAAATATTGATGCAAAACTGGGATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtatttaaaacttcttctagtttgcgacctttgaaatcaatatagatgtgagagtatatatgctaactaccatttgttttttcag
species | Arabidopsis thaliana |
transcript | AT3G57290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATEST: gi|164051992|gb|ES102452.1|ES102452
genomic: CTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCAT
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCATCGCCEST: gi|163970782|gb|ES090400.1|ES090400
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCC
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTT-CGTCGCCGTTAAACCAGGTGEST: gi|86078869|gb|DR374626.1|DR374626
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTG
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATEST: gi|163984424|gb|ES084195.1|ES084195
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCAT
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCGTCGCCGTTAAACCAGGTG
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGCCTTGTGGGGAAAGCTCGCATCTGAAATATTGATGCAAAACTGGGATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtatttaaaacttcttctagtttgcgacctttgaaatcaatatagatgtgagagtatatatgctaactaccatttgttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA