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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATCGTCCTCCTCGTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTTGGGTTGGTCAGTGCATCGCCTTGgtaagtcttactattaattctcacttcctagacaaagaactgagtaagatctatgagttgatatgttatctacgggcttttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G56920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G56920.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G30380.1 (Glycine max), 5'ss of exon 2
GCTATATCGTCCTCCTCGTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTTGGGTTGGTCAGTGCATCGCCTTGgtaagtct----tactattaattctcacttcctagacaaagaactgagtaagatctatgagttgatatgttatctacgggcttttgttttgcag----------
| |||||||||| || ||||| |  || ||||| || |||||||| ||||| || | |||||||||||| ||||||||||||||||| || || |  |  |||||| |    || | |||||| | |  |  ||||     |  ||  || |  || | ||||  ||  || | ||  |   |     || ||           
GTTATATCGTCCACCACGTGCTTCCCATTGCTCCATTTGCAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTTGGTCAATGTATTGGATCAgtaagtataagttattcttaattattatattatagagtttaatttg--tatggacttttagtt--taaattttttaatgttatcaaaatttcaaatcaatataa

upper sequence: AT3G56920.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G27420.1 (Glycine max), 5'ss of exon 2
GCTATATCGTCCTCCTCGTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTTGGGTTGGTCAGTGCATCGCCTTGgtaagt---------cttactattaattctcacttcctagacaaagaactgagtaagatctatgagttgatatgttatctacgggcttttgttttgcag-
| | |||||||| || ||||| |  || || || ||||| ||||| ||||| || | |||||||||||| ||||||||||| |||||||| || |  |  ||||||         ||||||  |      || |   |||   || |      ||  || |  ||||| |  |  |||| ||    | |   |  |||  
GTTGTATCGTCCACCACGTGCTTCCCATTGTTCCATCTGTAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTCGGTCAGTGTATTGGATCAgtaagtaaaagttttcttacttctctacaacattgtttagttgaaaatgattttattatattagagtttaatttctatcaaccaattctaaatcagcata

upper sequence: AT3G56920.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g00370.t01 (Vitis vinifera), 5'ss of exon 3
GCTATATCGTCCTCCTCGTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTTGGGTTGGTCAGTGCATCGCCTTGgtaagtcttactattaattctcacttcctagaca-----aagaactgagtaagatctatgagttgatatgttatctacgggct-tttgttttgcag---------------------------------------------------------------------------------------------
| ||||||||||||| ||||| | |||||||||||||||||| |||||||| || | ||||||||| ||||||||||||||||| ||||| || ||  |||||||  || |    ||  ||    ||||| |||           |   | |   |   |  || ||||   || | |  | | ||| |  | |                                                                                               
GATATATCGTCCTCCCCGTGCTTCTCACTGCTCAATCTGCAACAACTGTGTGCAGAAGTTTGATCACCACTGTCCTTGGGTTGGCCAGTGTATTGCTCTGgtaagcttttcccacaaagctt-tgtcctaaacattaatggagctttcattaatcccccgtatttatataagattttcatgttgtttatgataccaaatcaaggctggtttcttttaatcacccttttttctgatctaaacatttaggtatattcaataaatgactttgtttcttgcttttggttgcag