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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattattggaacaagtttaaagttttttttgtttttagtgtttctgtgctgatttttgttctcttcggattttcag

Basic information

species Arabidopsis thaliana
transcript AT3G55610.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 3
CGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattattggaacaagtttaaagttttttttgtttttagtgtttctg--tgctgatttttgttctcttcggattttcag-------------------------------
 |||| | || ||   ||| | |||| | |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||||| | |||||||||| |||   ||| ||||  |||    ||| |||||||||   | | || |  |||  || |  | |   ||   ||| | |                                
AGGAGCTGAATTCTCTTGGTTATGAGATTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGAAAATTAATTAACAGCAGgtaataaagttgtaacacctttgtt-tttgttttgttttgtttctctcagcatgcacatgtgaggttggttgaaattgtaatttacttgggtctttcatgggacatgtcacag

upper sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 3
CGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattatt--------------ggaacaagtttaaagttttttttgtttttagtgtttctgtgctgatttttgttctcttcggattttcag------
  || || |||||  | |||| | |||||||| ||||  |||| ||||| ||||| |||||||| ||||||||| |||||||    ||| ||||||||||||| ||  |||                | ||  | |  | || ||  | |||||  | |||    |    | | |||| |  |    |            
AAGAATTGAACTCTCAAGGATATCAGGTCATTGTGGTCACATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGGAGTTTACTCAACAGCAGgttttacaatttcctttctgccttgatatcatatatgtatttcttaattttttttttctttgccagtgagtatatgttattgttaagtaccttctcttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064871|gb|DR360628.1|DR360628
EST:     GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAG                         TTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGNAAGGCTTGTGC
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
EST: gi|86064874|gb|DR360631.1|DR360631
EST:     GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAG                         TTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
EST: gi|86064868|gb|DR360625.1|DR360625
EST:     GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAG                         TTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
EST: gi|152033743|gb|BP562130.3|BP562130
EST:     GTTGGTCTTGGTCGACAAAGGCTTCGATACAGGCAATTAGTCAACAGCAG                         TTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
EST: gi|86064870|gb|DR360627.1|DR360627
EST:     GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAG                         TTTTGCAGATTTACAGAAGCCACAAATGGAACTTTGATGGGAAGGCTTGTG
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTT-GATGGGAAGGCTTGTG
EST: gi|86064867|gb|DR360624.1|DR360624
EST:     GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAG                         TTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGC
EST: gi|86064869|gb|DR360626.1|DR360626
EST:     GTTGGTCTTGGNCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAG                         NTTTGCAGATTTACAGAAGCCACNAATGGAACTTTGATGGGAAGGCTTG
genomic: GTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattat ... ggattttcagTTTTGCAGATTTACAGAAGCCACAAATGGAACTT-GATGGGAAGGCTTG