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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G55280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta------aaacttcactgagata-tgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag-
| ||||||||||||||| |    ||||||||||| |||||||| | |||||||||||||||||| ||||| ||| | |||||||| ||||| || || |||| | ||||       | |||||| |       | | |||         || ||| |   |    |  |||| | |   
TGGTCTTCATTGTTGACCTTAAGGCTGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTACGACATCCAGGCAAAGAAAGTGAACACTCTGATCAGgttagcactttccttcatacttcattttatcgcttgatttgctaggtagtgtagttaactgaccctacttgtcttccag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 5'ss of exon 2
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatg----------taaacatggagtgatgagtgtat-gtttgtatgcag-----
| |||||||| || ||| ||   || |||||||| |||||||| |  ||||||||||||||||||||||| ||| | |||||||| ||||| || || |||| |  |    | ||||  |     |||| |  ||           |  |  | ||    |  |||||| | || | || |      
TTGTCTTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaactcaccttcctttgttcatggctgaatacgcttcattctgtatgttgacaacttggtgtatcgattttctgtaatacag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G124411_T04 (Zea mays), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaa----aacttcactgagatatg---ggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag-------------
| ||||||||||| ||| ||   || |||||||| |||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||| || |||| | || |      |   | | |    | ||     |||||       || |    ||||| |||  |||  ||                
TTGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagt-tattcttgattgtgtctgtcctgtccag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G166659_T01 (Zea mays), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagat---atgggttta---tgtaaacatggagtgatgagtgt------atgtttgtatgcag
| ||||| ||||||||| ||   || ||||||||||||||||| | ||| |||||||||||||||||||||||  | ||||| ||||||||||| || |||| | | ||    || || ||  ||    || |  ||   ||| |   ||      ||||||       |||| |  ||||||
TGGTCTTTATTGTTGACCTCAAGGCAGACAAGAAAAAGATCAAGGCTGCGGTCAAGAAGATGTATGACATTCAAGCAAAGAAGGTCAACACCCTGATCAGgttagcgctttg-ctccagtgttattttttgtgcataatttgttattttgtgcaactgagtgattcttgatgtgtccatgcag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G083253_T04 (Zea mays), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacact-----------aaaacttcactg----agatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag
| ||||||||||||||| ||   || |||||||| |||||||| | ||| |||||||||||||||||||| ||| | ||||| ||||||||| | || |||| | ||||           ||   ||  |||    |  |||    || || ||  |  |||| ||   | |  || | | |||||
TGGTCTTCATTGTTGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCCGTCAAGAAGATGTATGACATCCAGGCAAAGAAGGTCAACACCTTGATCAGgttagcacttgccccagtgtaattttttcctgcacgatttattatgttgtgcaactaaagagttattcttat-cgtgtctgtgcag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G172153_T01 (Zea mays), 5'ss of exon 11
---TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaa----aacttcactgagatatg---ggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag--------
   | ||||||||||| ||| ||   || |||||||| |||||||| | ||||| |||||   |||||||||||||| ||||||| ||||||||||| || | || | || |      |   | | |    | ||     | |||       || | |  |||||  ||  ||   ||           
CTCTGGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGCCAAGA---TGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAAgttagcatttggtccagtgttattttcttgtgcataatctattatgttgtgcaattgtgagttaattcttaactgtgtctgtccag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G52310.1 (Glycine max), 5'ss of exon 3
-TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaa---acactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag---------------------------
 | || || ||||||||| ||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||| | |||||||| || ||  | || ||||||   | |  |||| |  | | |||| ||  |  ||||||   || | || ||| |  |       ||| ||                           
CTGGTTTTTATTGTTGACCTCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGGCGAAGAAAGTGAATACTTTAATCAggtaatggaaatgaaaaatgtatttagatctgc-tacatgtaattttgaattgttga-taaacaaccaaatgtagagaaagaggaccaattgcttagcttac

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G04670.2 (Glycine max), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatgg---------agtgatgagtgtatgtttgtatgcag--------------------
| || ||||| || ||| | || ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||| | || |||| |    | |        ||   |  |  ||| | | |  ||           | |||  |  ||||| ||| |   |                     
TGGTTTTCATAGTCGACTTGCGGGCTGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTAAACACCTTAATCAGgtgagtctttatgtagtgatgcttttagaatttgtttgatgattttttattgctaatgacaatggtatgcttgcagtgaattttattactgagacataca

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacact---aaaacttcactgaga---------tatgggttta----tgtaaacatggagtgatgagtgtatgtttgtatgcag-------------
| || |||||||||||| | || || |||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||| |||||| | || |||| | |  |   |||      || | |         | | | || |    ||  |   |  | |||  |  ||||| ||| |   |              
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaa--acactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag----------------------------
| || || ||||||||| | |||||  ||||||||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| ||  | || ||||||    | | | |   || | | || ||  |  ||||| |  ||   || |||    |       ||| ||                            
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgc-tacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgt--atgcag-------------------------------
| || |||||||| ||| | ||||| |||||||| |||||||| ||||| || ||||| ||||||||||| ||| |||||||||| |||||| | || |||| | ||   |   || | |||    |  ||||   ||   ||||  | || | || ||  |||   ||| |                                
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaacta---tttaatgactattcagttttgatagtaatggtttcataa-tgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G07160.2 (Glycine max), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaaca-ctaaaacttcactgagatatgggt--ttatg--taaacatggagtgatgagtg------tatgtttgtatgcag------------------
| || |||||||| ||| | ||||| |||||||| |||||||| ||||| || ||||| ||||||||||| ||| |||| ||||| |||||| | || |||| | || |||     | | ||   | | | |  | |||  |  | || |  | ||   ||      | ||||  |  | ||                  
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCGGTGAAGAAAATGTATGACATCCAGGCCAAAAAAGTGAACACCTTGATCAGgtgagcatctatgcaatgattgcagttttgatagtaatgatttcatattgcattattgctgatgaaatttgttgattggtagtgatttccgtattcactt

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactga------gatatgggtt-tatgtaaacatggagtgatgagtgtatgtttgtatgcag----------------------
| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| |||||  | || ||||||   | |  | |||||| |       | |||  || | | |    | |||  |   | |   | |||  |   ||                      
TGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGgtaatttccattaattcactcacttaacaacatgcattgtttttgggtagggaaaggaaaattcttctttacaccaaggctagatgattaaaagaaataa

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 5'ss of exon 3
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgta--aacactaaaacttcactgagatatgggtttatg--taaacatggagtgatgagtgtatgtttgtatgcag--------------------------
| || |||||||||||||| |||||  ||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||||| || ||||| || |||||  || | |   | | || | | || |    ||||   | |  ||  ||   | | || ||  | | ||  ||                          
TGGTTTTCATTGTTGACATTCGTGCCAACAAGAAGAAGATAAAGGATGCTGTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatatttttattccaattatattttttattatccctgagtatacagcagttattggatagtcg-ataaagatatcagacttttcaaagttagattc

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 5'ss of exon 2
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag-------------------------------
| ||||||||||||||||||||||||||||| || ||||| || |||||  | ||||| |||||||||||||||||||||||||| || ||| | || ||||||| |||  |  || | |    |  |   ||   |  | ||  | ||   | | | | ||    ||||                                
TTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGgtaaagacttcattttgaatcttctcagcagttcaattgaaatt-attggc-atttttttttcagttgcaacaattcatatgattatcattttttgttggca

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 5'ss of exon 1
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaaca------ctaaaacttcact----gagatat-------gggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag------------
| || ||||| || ||  | || || |||||||| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||| ||  | || |||| |  |      |  |  ||| | |    | |  |        ||||||  | ||    |   |    | ||  |  |  | || ||            
TGGTTTTCATCGTGGATGTGCGCGCCGACAAGAAGAAGATCAAAGAGGCCGTCAAGAAGATGTACGACATTCAGACCAAGAAGGTCAATACTTTGATCAGgtgattatgttttcccatgctttatttctcggggcaacactctagggtttgggaaactgggtttttgcaattgcgtcgtgttgtgtagctccagattttc

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 5'ss of exon 1
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaaca-ctaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag----------------------------
| || ||||| || ||| | ||||| |||||||| ||||||||  | ||||| ||||| ||||| ||||| ||||||||||| ||||||||  | || |||| |    |     ||    || ||| |   |  | ||      ||  |   ||     ||| |   || |                             
TGGTGTTCATCGTGGACGTGCGTGCGGACAAGAAGAAGATCAAGCAGGCTGTGAAGAAAATGTACGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtgattgtcctcctctctgttgggatttccttcgaagtgccttagggttttcgaactgttgtctccttgtaattacgtcgggtgcctgtttcagtcccgg

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactga-gatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag-----------------------------
| || |||||||||||  | || ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||  | || |||||  || ||   |  |  ||  | ||||   |   ||     | | || | | || |  || | |  ||                               
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgt-tagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S46_72V6.1 (Physcomitrella patens), 5'ss of exon 1
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaaca---ctaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag--------------------------
| ||||||||||| ||| | || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||  | || ||||        ||      || |     |     ||||   || || ||  || ||| | | ||||| |  |  |                          
TGGTCTTCATTGTGGACGTGCGCGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgtttctctcctctcccctttttccttttttaatgaatcagggtttgttgattttttgtttcttcggtggtggtctcgtttgcgcaaattgcgtg

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ09823 (Selaginella moellendorffii), 5'ss of exon 2
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagt-gtatgtttgtatgcag--------------------------------------------------------------------------------------------------
| |||||||| || |||||||| || |||||||| ||||||||  | || || |||| |||||| || || ||||||||||| || ||||| || || |||||| |  |    |||   |       ||   ||    |   ||   |   || |    | || || ||  |                                                                                                  
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttc--ctcggtggtagtctagtgtgtcttttcgattcacttcttcgtgtgtgggcttaccatttcttggttcgtttgtctgattgatttttggctttccagcttctcattgttttcattcatgggcttaccactttcgtttttttttccag

upper sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ15194 (Selaginella moellendorffii), 5'ss of exon 2
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttca----ctgagatatgggtttatgtaaacatggagtga---tgagtgtatgtttgtatgcag----------------------------------------------------------------------------------------
| |||||||| || |||||||| || |||||||| ||||||||  | || || |||| |||||| || || ||||||||||| || ||||| || || |||||| |  |    |||      ||  |   | |  |  | |     |  | |     |    || |||  |  | | |                                                                                        
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctcgtttgtcttttcaattcacttcttcgtgtgtgggcttaccgtttcttggttcttttgtctgattgattttggctttctagcttctcattgttttcattcatgggcttaccactttcttcttttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076984|gb|DR372741.1|DR372741
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
EST: gi|116464057|gb|EG506649.1|EG506649
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
EST: gi|116415207|gb|EG457799.1|EG457799
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
EST: gi|164139366|gb|EL978579.1|EL978579
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGAC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGAC
EST: gi|164229153|gb|EL986688.1|EL986688
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGAC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGAC
EST: gi|86082383|gb|DR378142.1|DR378142
EST:     TCAAGAAGATGTATGACATTCAGACCCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCBGTATGTGAGGTTGACTCCTGATTATGATG
genomic: TCAAGAAGATGTATGACATTCAGA-CCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGC-GTATGTGAGGTTGACTCCTGATTATGATG
EST: gi|164179873|gb|ES129897.1|ES129897
EST:     AAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
genomic: AAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
EST: gi|86076575|gb|DR372332.1|DR372332
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGC
EST: gi|124812078|gb|EH896944.1|EH896944
EST:     TCTAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGAT
genomic: TC-AAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGAT
EST: gi|124774309|gb|EH864438.1|EH864438
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCA-CACCCTCATTAG                         GCCCGATGGAACAAAGAAGGC
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGC
EST: gi|164027050|gb|ES214922.1|ES214922
EST:     TCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCAGTTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGAC
genomic: TCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCA-TTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGAC
EST: gi|164226109|gb|EL993638.1|EL993638
EST:     GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAG                         GCCCGATGGAACAAAGAAGGCGTATGTGAGGT
genomic: GTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacacta ... ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA