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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGAATCTGGAGgtgagattgattgatgaaacatttctcagtagggtgttgcttttagctttttgttaggggcatcgttgaatgtgttgtttgatgttccttcag

Basic information

species Arabidopsis thaliana
transcript AT3G54010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54010.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G16440.1 (Glycine max), 5'ss of exon 3
GTTATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGAATCTGGAGgtgagattgatt--gatgaaacatttctcagtagggtgttgcttttagctttttgttaggggcat-cgttgaatgtgt--tgtttgatgttccttcag--
 |||| |||||||||||  | |||||  ||||||| ||| ||||||||||||| || ||||| | |||||||||| |   ||  | ||  |     ||   | |  ||||    ||| ||   || |||     |  ||||  | |||  ||  |  | ||   | |   
ATTATCTATCACTGCACAATTCGGACTTTGGATGGAGTACTTGTGGAATCTACCAGATCAGATTATGGAGgtgaggtgatttaaggtgctagggacctttttggtttgttttgattatctagatgatagtcatttatgttggttttgtcttgcattttattttattaata

upper sequence: AT3G54010.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0007g01460.t01 (Vitis vinifera), 5'ss of exon 4
GTTATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGAATCTGGAGgtgagattgattg--------atgaaacatttctcagtagggtgttgcttttagctttttgttaggg-gcatcgttgaatgtgttgtttgatgttccttcag
||||| ||||| || || || || |||||||||||||| |||||||||||||| || ||||||| |||||||||| | | |          |||| |  ||   ||        |  | |  |     |   ||      ||   |  || | || ||| || |  |   | 
GTTATATATCATTGTACGGTTCGTACACTGGATGGTGTTGTTGTGGAATCTACCAGATCAGAATGTGGAGgtgagttggctcttccaagatatgagagtttctccaaccattcctctcctccaaaacctacctaatatatatatatatatatatt-tttcatttatcaata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164093442|gb|ES072867.1|ES072867
EST:     GGTCAGAATCTGGAG                         GGAGAGGTGTACCGATCAGAGATGTCTTGGGAAAGAGCAAAATGATTCTTG
genomic: GGTCAGAATCTGGAGgtgagattga ... gttccttcagGGAGAGGTGTACCGATCAGAGATGTCTTGGGAAACAGCAAAATGATTCTTG