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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat...

Basic information

species Arabidopsis thaliana
transcript AT3G53870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacat--ttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgat---ttggataggttactagtgtatataagcat
| ||||| || ||||||||||| |||||| | || ||||| |||||||| ||||| |||||  | || |||||||| || ||||| ||||| ||  | ||||    |    | ||  |  |||  | |  |   |  ||| |  | |||  |    | |    ||  || |     |||     |  |  | ||| |   |    
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttag-atattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga----

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtt-tgctatgttactttgtttg-atcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat
||||||| || || |||||||| |||||| | || ||||| ||||| || ||||| |||||  |||| ||||||||||||||||| || || ||  | ||||    || || |    | | ||   | |   | || ||||   || |  |   ||| | | | |     || ||| |     ||  |  | |     |   
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg--

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgattt--ggataggttactagtgtatataagcat----
| ||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||  | || ||||||||||| ||||| ||||||||||| |||||  |||| |  ||    |   |  |   ||  | |  ||  | | | |  |||||||||||  |  |||||  || |  |||| ||  | || |    ||    
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTCTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCTGTTCGCAGgtataacatgttact----ctgctaatgcattcttctagtttgtga-tgtgatttatcattaggcaaggattttaggtttagttatta-cgaatttgttgattact

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgta-cgacatttctct---agttcgtttgctatgttactttgtttgatcagtttagt---ttatcattagagactgatttggataggttactagtgtatataagcat
| ||||||||||| |||||||| ||||||||||| || |||||||| |||||||| |||||  | || ||||||||||| ||||| ||||| ||||| |||||   | ||| ||||   | ||| ||   |    || | | | | |  |  ||  |   |||   | |||      |  | || ||||   | | |||        
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCCGTTCGCAGgtaattatattactctgcaaattcattcatttgtataatatatcttaatatcttgatatcttaatttcagatgtcattaggcatgggttttaattttatt-------

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G33240.1 (Glycine max), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacat-ttctctagttcgtttgctatgttactttgtttgatcagtttagttt--atcattagagactgatttggataggttact-agtgtatataagcat
| ||||||||||| |||||||| |||||||||||  | |||||||| |||||||| |||||  | || |||||||| || || || ||||||||||| |||||  |||| ||     | |  |    | |  ||  |      |  | | ||| ||   | ||||   | |  | |  ||   || || | ||| |||      
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCTTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTCCTCGGCGGCCTCGCTGTTCGCAGgtataacatattactctgctaatgcattcttatatatcaggcaaggattctagctttggttattatgaatt--tgtacattacttgcttaatgtttatgttt--

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat-----
|||| |||||||| || ||||| ||||| || ||||| || || || ||||||||||||||| | || |||||||| |||||||| |||||||| || ||||   | |||  | |  || |||    |   ||  |  |||  |   || | ||  |   | | || | || | | |  |  |  | |||| | ||         
TTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgtgt-atattcatttt-ttagttgataaaaatatgtaattttttt--ttaaattgtttcattgcgattcatgtcgttgtgaaaa-actgtagaaaattgctgtcg

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat----
| || |||||||| || ||||| ||||| || ||||| || || || ||||||||||||||| | || |||||||| |||||||| |||||||| || ||||   | |||  | |  || |||    |   ||  |  | |  |      | | | ||||| | || | || | | |  |  |  | |||| | ||        
TCGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGATACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgtgt-atattcatttt-ttagttgataaaaatatgtaatctttttttaaaattgtttcatt-gcgattcatgtcgttgtgaaaa-aatgtagaaaattgctgtc

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat-----
|||| |||||||| || ||||| ||||| || ||||| || || || || |||||||||||| | || |||||||| |||||||| || ||||| || |||||  |    |   |  ||   ||| | |     |||  |  |    | ||  |  |||||    | |  |||  || |   || | | |  |||    |     
TTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATAGCACAGGCTGAGTCTCTCCGCTACAAGCTCCTTGGTGGCCTAGCTGTGCGCAGgtat-atgcattcttgtttttattgttgt----ttttactaaaatgatatacctattcatttcttagttgtttacattgtagacaaatcttgatagctgttggaa

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat-----------------------------------------
||||| | |||||||||||||| |||||||| ||||| || ||||| ||||||||||||||  | || |||||||||||||| ||||| ||||| || |||| |||    |  | | |    |   ||||    | | ||  |||||||    || | ||| ||  ||   ||    | ||||  |||   ||| || ||                                         
TTGAGTTGTATGCCGAGAAGGTGAACAACAGGGGTCTGTGCGCCATTGCTCAGGCTGAGTCGCTGCGGTACAAGCTTCTTGGAGGTCTTGCTGTGCGCAGgtgcgatgggttgccattcgtgtaattatgcccgtgtattc-atcagttgcactt-tgatttgaatctagcttcc-catgtta--agtacttatcagaatcgatggtgtatgacgttttcttttttgtatgacgggtacag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttact------ttgtttgatcagtttagtttatcattagagactgatttggat--aggtta-ctagtgtatataagcat------------------------
| ||| | || || ||||||||||||||||||||||| || || || || |||||||||||| | || |||||||||||||||||||| || ||||| |||| ||   || |  | |   || |    ||  |        ||||  |   |  ||| ||   |||     |     || | |  |||| |  | || |  |    | |                        
TGGAGTTGTACGCTGAGAAGGTTAACAACAGAGGTCTATGCGCTATTGCGCAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacga----catttct-ctagttcgtttgctatgttact---ttgtttgatcagtttagtttatcattaga--gactg---atttgga---taggttactagtgt-atataagcat------------------
| ||| | || ||||||||||| |||||| | ||||| || ||||| || |||||||||||  | || ||||| || || ||||||||||||||||| ||||  |     | | |||  |||    | | |||     |    ||| |||||||  ||  |||   |  ||    ||||    ||  ||    ||  ||    | | || |    ||                  
TGGAGTTGTACGCCGAGAAGGTGAACAACCGGGGTCTGTGCGCCATTGCCCAGGCTGAGTCGCTGCGATACAAACTCCTGGGTGGTCTCGCTGTTCGCAGgtgtgtgcctcgtatctattagactttgtactaatccgcactattgcttgatcaccttgattttctacgaggttaactgcgcgttcagagctcagcgtatcgttctgatgtgctgatcttaaatctgaacgctag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacat----------------ttctctagttcgttt-gctatgttactttgtt-tgatcag------tttagtttatcattagagactgatttggataggttactagtgtatataagcat-----------------------------
||||| | || || || |||||||||||||| || || || ||||| |||||||| |||||||| || |||||||||||||| || || || || || |||| |||                   |  |||| |||   | ||  ||   || ||   || |||       |||| ||| |  |   | | | ||||          ||||| | | |    |                              
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat
| ||||| |||||||||||||| |||||| | || ||||| ||||||||||| || |||||||| || |||||||| || || || || || || || ||||  ||  ||||| |  ||  || ||  || | ||  |                                                              
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttc-ttttttggccttggtgctcag--------------------------------------------------------------

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat
| ||||| |||||||||||||| |||||| | || ||||| ||||||||||| || |||||||| || |||||||| || || || || || || || ||||  ||  ||||| |  ||  || ||  || | ||  |  |  ||   || ||                                               
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttc-ttttttggccttggtgctaagagttctctacttcgtcag--------------------------------------------

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat
| ||||| |||||||||||||| |||||| | || ||||| ||||||||||| || |||||||| || |||||||| || || || || || || || ||||  ||  ||||| |  ||  || ||  || | ||  |  |  ||   || ||                                               
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttc-ttttttggccttggtgctaagagttctctactttgtcag--------------------------------------------

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat
| ||||| |||||||||||||| |||||| | || ||||| ||||||||||| || |||||||| || |||||||| || || || || || || || ||||  ||  ||||| |  ||  || ||  || | ||  |  |  ||   || ||                                               
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttc-ttttttggccttggtgctaagacttctctacttcgtcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163990070|gb|ES093330.1|ES093330
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTG
EST: gi|116450432|gb|EG493024.1|EG493024
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|47829794|gb|CK119478.1|CK119478
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|164029771|gb|ES192429.1|ES192429
EST:     GTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: GTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|47832087|gb|CK121771.1|CK121771
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGCGTTGAGGATTGTTATGGAGAG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAG
EST: gi|125310179|gb|EL324264.1|EL324264
EST:     CTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAGGGGATG
genomic: CTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|125126963|gb|EL172030.1|EL172030
EST:     CGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAGGGGATG
genomic: CGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|124991043|gb|EL063312.1|EL063312
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGG
EST: gi|125026514|gb|EL098783.1|EL098783
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGG
EST: gi|164034933|gb|ES135635.1|ES135635
EST:     GGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: GGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|86087971|gb|DR383730.1|DR383730
EST:     CTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|125316505|gb|EL330590.1|EL330590
EST:     TCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAAGAGTGGAGCTAAGGGAT
genomic: TCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGA-GAGTGGAGCTAAGGGAT
EST: gi|124777188|gb|EH867131.1|EH867131
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATG
EST: gi|125258945|gb|EL273030.1|EL273030
EST:     CGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|125278656|gb|EL292741.1|EL292741
EST:     TCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: TCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|164005621|gb|ES000299.1|ES000299
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTG
EST: gi|116445202|gb|EG487794.1|EG487794
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|164002688|gb|ES062368.1|ES062368
EST:     GGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGC
genomic: GGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGC
EST: gi|124872910|gb|EH954555.1|EH954555
EST:     TACGTTACAAGCTCCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: TACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|125215708|gb|EL229792.1|EL229792
EST:     AGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: AGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|164121985|gb|ES167414.1|ES167414
EST:     GGCTGAGTCTTTACGTTACTAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: GGCTGAGTCTTTACGTTAC-AAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|125291844|gb|EL305929.1|EL305929
EST:     TCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: TCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|116449038|gb|EG491630.1|EG491630
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|124934681|gb|EL011732.1|EL011732
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAG
EST: gi|164170278|gb|ES038959.1|ES038959
EST:     TTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: TTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
EST: gi|116454700|gb|EG497292.1|EG497292
EST:     CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAG                         GGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG
genomic: CAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatt ... tgttgtatagGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atttctct