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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctgagacactcgagacttttttacaattttgacaggtcttttcaattgacatcgtttttgttctcttgtgccatgtttcatgctatatctag

Basic information

species Arabidopsis thaliana
transcript AT3G52300.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52300.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g37320.1 (Oryza sativa), 5'ss of exon 3
GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaa---tagctgagacactcgagactttt-ttacaattttgacaggtcttttcaattgacatcgtttttgttctcttgtgccatgtttcatgctatatctag------------------------------------------------
||||||| || || ||||||||||||| || |||||| | |||||||||||||||||||| ||||||| || || | ||| | | || || ||| || | | | | | | | ||| | | || ||| || | |||
GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaactataagtctatcacccttgtctggaactatcattctgttatatgtgcccgtctttctctcatcttgcttcaacaggttatccttc-tgtaccctttagatactgatgcaccttttatccttttctcttttatcacgtcatatgcag

upper sequence: AT3G52300.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G157018_T01 (Zea mays), 5'ss of exon 3
GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg---agacactcgagacttttttacaattttgac---aggtcttttcaattgacatcgtttttgttctcttgtgccatgtttcatgctatatctag--------------------------------------------------------------------------------------------
|||| ||||| || |||||||| |||| ||||||||| | ||||||||||||||||||||| |||| || | | || ||||| | |||| | | ||| | | ||| ||| || | || ||| | ||||| | | | | | ||||
GCATCGAGATCCCGAAGTACGTCGACACAGTTACTCCCCAGTACAAGCCAAAGTTTGATGCTGTGgtcagcagctgttgctctcacacttttgtattttaaagtttattgcctgaaaatctattctgtt--ttttgtgttttctatcttgagttgctctaccaacatttcctagatgagtgcatccaattttttagttcccgtattaactccttaccttattgctgatgtgcttctttttggttcttatatttatgttacctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024139|gb|DR319892.1|DR319892
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCG
EST: gi|86024137|gb|DR319890.1|DR319890
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024117|gb|DR319870.1|DR319870
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|301502222|gb|HO207762.1|HO207762
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024141|gb|DR319894.1|DR319894
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86078461|gb|DR374218.1|DR374218
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACA
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACA
EST: gi|86024106|gb|DR319859.1|DR319859
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024101|gb|DR319854.1|DR319854
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024104|gb|DR319857.1|DR319857
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024116|gb|DR319869.1|DR319869
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGA-CTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86081814|gb|DR377573.1|DR377573
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGC-TT--TG-                         TTGGTGGAACTGAAAGAAGCAGWACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024099|gb|DR319852.1|DR319852
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86078506|gb|DR374263.1|DR374263
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGC-TT--TG-                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024120|gb|DR319873.1|DR319873
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGA
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGA
EST: gi|86024119|gb|DR319872.1|DR319872
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86082095|gb|DR377854.1|DR377854
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGC-TT--TG-                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024100|gb|DR319853.1|DR319853
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024128|gb|DR319881.1|DR319881
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024102|gb|DR319855.1|DR319855
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAACG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAA-CG
EST: gi|86024155|gb|DR319908.1|DR319908
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         TCGGTGGAACTGAAAGAAGCAGAACAG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAG
EST: gi|86024135|gb|DR319888.1|DR319888
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAATCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024098|gb|DR319851.1|DR319851
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024105|gb|DR319858.1|DR319858
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024151|gb|DR319904.1|DR319904
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024150|gb|DR319903.1|DR319903
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024152|gb|DR319905.1|DR319905
EST:     GTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATCGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: GTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGAT-GCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024148|gb|DR319901.1|DR319901
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024136|gb|DR319889.1|DR319889
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024154|gb|DR319907.1|DR319907
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAG
EST: gi|86024140|gb|DR319893.1|DR319893
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024121|gb|DR319874.1|DR319874
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024149|gb|DR319902.1|DR319902
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024144|gb|DR319897.1|DR319897
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024109|gb|DR319862.1|DR319862
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024142|gb|DR319895.1|DR319895
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAATTCGCTCAAGGAGTCTG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTG
EST: gi|86024103|gb|DR319856.1|DR319856
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024133|gb|DR319886.1|DR319886
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024111|gb|DR319864.1|DR319864
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024129|gb|DR319882.1|DR319882
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024114|gb|DR319867.1|DR319867
EST:     CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG-T--                         T-GGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGGTGAgtaatagctg ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG