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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgattagcaaaggcatatataaacaatcacatatctccgcatgagtgatcttcagcaagagtgatcaaagtttccttagatcttaaagaaacctcatggattctgtttcgaaattacag

Basic information

species Arabidopsis thaliana
transcript AT3G51250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51250.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G36960.1 (Glycine max), 5'ss of exon 3
GCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgattagcaaaggcat-atataaacaatcacatatctccgcatgagtgatcttcagcaagagtgat-caaagtttccttagatcttaaagaaacctcatggattctgtttcgaaattacag
| ||  | ||||||||||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| ||  | ||| ||||||||||  | ||   | | |||| || || |   | | ||| ||    || || |||        |   |  |  ||  ||| |||   || ||||  ||  | |||                     
GTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaatctgatgatagtataatatttgcttt--tcctaaactaa--tgatg---------------------

upper sequence: AT3G51250.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G08300.1 (Glycine max), 5'ss of exon 3
GCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgattagcaaaggcat-atataaacaatcacatatctccgcatgagtgatc---ttcagcaagagtgatcaaagtttccttagatcttaaagaaacctcatggattctgtttcgaaattacag
| ||  | || ||||||||||||||  |||| ||||| || ||||| || ||||||||||| ||||| ||  | ||| ||||||||||  | ||   | | |||| || || |   | | ||| ||    || || |||    |   || | ||| || | | ||  |||   || ||||     ||  ||  |                  
GTAAAGTGTGCGATGCTGTTGAAGTAACTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatacgcattatctagagtgtaaaatacctatagattagggattgaatctggcgatagt-ataatatttggctt---tcctaaa-----ctagtgatt------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406159|gb|EG448751.1|EG448751
EST:     AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAG                         GTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
genomic: AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgatta ... gaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
EST: gi|124724345|gb|EH815747.1|EH815747
EST:     TCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAG                         GTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
genomic: TCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgatta ... gaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
EST: gi|124753300|gb|EH843430.1|EH843430
EST:     AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAG                         GTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGG
genomic: AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgatta ... gaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGG