1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattctttcctagatgatactgtggacctatggcttttgcatgtgtatgattaaaccaacttcactgctttacaaacttttgttttcaactattcaagagtggaaagcaatttagtgtatcgctatataactagttttaactggaataaacttagcttttgttcttccaatttgtttgcag
species | Arabidopsis thaliana |
transcript | AT3G51130.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040774|gb|DR336529.1|DR336529
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040770|gb|DR336525.1|DR336525
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040779|gb|DR336534.1|DR336534
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTSATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040778|gb|DR336533.1|DR336533
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040777|gb|DR336532.1|DR336532
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040776|gb|DR336531.1|DR336531
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040771|gb|DR336526.1|DR336526
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTACEST: gi|86040773|gb|DR336528.1|DR336528
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
EST: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG AGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
genomic: TTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattct ... ttgtttgcagAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGATGCGCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAGgtacaattctttcctagatgatactgtggacctatggcttttgcatgtgtatgattaaaccaacttcactgctttacaaacttttgttttcaactattcaagagtggaaagcaatttagtgtatcgctatataactagttttaactggaataaacttagcttttgttcttccaatttgtttgcag
- - - - - - - - - - - - - - - - - AGATCA