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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacatcttcatatcattcttgatttgtatctttgtattgttgtcatacaatcgctgaagatgtctcgagaatctttaaaatgctttgaggcaaatctatactaacattcaagtcagtgtaattgctgaaacaaaattaaagtctcacacttttgttattgtggttttcaaaatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50830.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv00s0207g00220.t01 (Vitis vinifera), 5'ss of exon 3
TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacatcttcatatcattcttgatttgtatctttgtattgtt-gtcataca-atcgctgaagatgtctcgagaatctttaaaatgctttgaggcaaatctatactaacattcaagtcagtgtaattgctgaaacaaaattaaagtctcacacttttgttattgtggttttcaaaatgtgcag
 ||||| ||||| ||||||||||||||| ||||  |||| || || |||||||||||||  |||||||||||| ||    |||    ||   ||  |   ||  |  |   ||| || || ||    | |  | | | ||| |   |||| |         ||| |  ||||    |                                                                                
AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgt-atattctctatgcatgggtcgagtactgattgatgccatttttagttatttgcagcaataatgctgtgtatggaatttc------atttttaaccaaacacttc-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125012969|gb|EL085238.1|EL085238
EST:     TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG                         ATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
genomic: TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacat ... aaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
EST: gi|125274373|gb|EL288458.1|EL288458
EST:     GGTTGTTCTCANACTTTTCTTCCCTAAGCATTTCCCAG                         ATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
genomic: GGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacat ... aaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
EST: gi|301502698|gb|HO208238.1|HO208238
EST:     TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG                         ATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
genomic: TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacat ... aaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC