Sequence
atgc intronic sequence ATGC exonic sequenceATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTgtaagtttagtcatcttttttttaactgaggttgaaaagagtcaacgttacttgtgttttacaaaatttgaaactgaatttctttctgtcatcattag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G49640.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G49640.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os04g44890.1 (Oryza sativa), 5'ss of exon 3
ATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTgtaagtttagtcatcttttttttaactgaggttgaaaa---gagtcaacgttacttgtgttttacaaaatt--tgaaactgaatttctttctgtcatcattag
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ATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTgtaagtcttat--ttctgaaaatatttacggttgaagttctgaagtaaaataatataggttccaatgagtggataaatccatatttcctttttccatgaaaa-
upper sequence: AT3G49640.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G36840.1 (Glycine max), 5'ss of exon 3
ATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTgtaagtttagt-catcttttttttaactgaggttgaaaagagtcaacgt-tacttgtgttttacaaaatttgaaactgaat--ttctttctgtcatcattag
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ACAATGTTGTGTTTAGAACCTGTGATGAAGAAAAAGATAGGGTTGTGTTTCAAATAGGAACATCAGATGCTGTGAGGGCCCTAACTACTGCTCAGTTAGTgtaagttaattgtgtattttggtttccctgtttacactgaagttgatgtgtgattttgcttttaacttgctttagttaaatagttgtcattgtcagctgt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|152034014|gb|AU239627.2|AU239627EST: CAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGT GTGTAATGACGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCATT
genomic: CAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTgtaagtttag ... tcatcattagGTGTAATGACGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTgtaagtttagtcatcttttttttaactgaggttgaaaagagtcaacgttacttgtgttttacaaaatttgaaactgaatttctttctgtcatcattag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT