1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTTGGCCAAGGGAAGCGAAGAATGAACAAAAGGACAAGCTTGGCTCAGAAGGATGATGTAATCAGGAGAACTGTATATGTCTCTGACATCGACCAACAGgtaaaaagcggaaagctattttcgataacattaaaggaatccattttataaccactgcctctcttactttgttttgtttgtag
species | Arabidopsis thaliana |
transcript | AT3G49390.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGATGATGTAATCAGGACAACTGTATATGTCTCTGACATCGACCAACAG GTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAGEST: gi|124961561|gb|EL036079.1|EL036079
genomic: AGGATGATGTAATCAGGAGAACTGTATATGTCTCTGACATCGACCAACAGgtaaaaagcg ... ttgtttgtagGTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAG
EST: AGGATGATGTAATCAGGAGAACTGTATATGTCTCTGACATCGACCAACAG GTTACAGAGGAGAACCTCGCAGEST: gi|125257895|gb|EL271980.1|EL271980
genomic: AGGATGATGTAATCAGGAGAACTGTATATGTCTCTGACATCGACCAACAGgtaaaaagcg ... ttgtttgtagGTTACAGAGGAGAACCTCGCAG
EST: GAGAACTGTATATGTCTCTGACATCGACCAACAG GTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAG
genomic: GAGAACTGTATATGTCTCTGACATCGACCAACAGgtaaaaagcg ... ttgtttgtagGTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGGCCAAGGGAAGCGAAGAATGAACAAAAGGACAAGCTTGGCTCAGAAGGATGATGTAATCAGGAGAACTGTATATGTCTCTGACATCGACCAACAGgtaaaaagcggaaagctattttcgataacattaaaggaatccattttataaccactgcctctcttactttgttttgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA