1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatttctatctctctttcatttattcatataactatcaagtttcatttcttgctatatatcgatgggattgttggttatgattattgaacttag...
species | Arabidopsis thaliana |
transcript | AT3G49010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTEST: gi|86076156|gb|DR371913.1|DR371913
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCT
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|163969615|gb|ES137857.1|ES137857
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTAEST: gi|164209263|gb|ES159864.1|ES159864
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTA
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACEST: gi|86085358|gb|DR381117.1|DR381117
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTAC
EST: TTCACTCTTGAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|47829477|gb|CK119161.1|CK119161
genomic: TTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|86018573|gb|DR314319.1|DR314319
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|124978563|gb|EL051722.1|EL051722
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGEST: gi|124967519|gb|EL041549.1|EL041549
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTG
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGEST: gi|163990432|gb|ES210592.1|ES210592
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAG
EST: ACAACATGAGGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGEST: gi|86074296|gb|DR370053.1|DR370053
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAG
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|86018575|gb|DR314321.1|DR314321
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|124798607|gb|EH888286.1|EH888286
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: GGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCNCCTACAATTGGTATTGEST: gi|164212431|gb|EL989002.1|EL989002
genomic: GGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTG
EST: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCEST: gi|164154494|gb|ES041477.1|ES041477
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCC
EST: AAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|164005955|gb|ES013597.1|ES013597
genomic: AAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: GAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATEST: gi|86074609|gb|DR370366.1|DR370366
genomic: GAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTAT
EST: CAACATGAAAGSTCAGAMCCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|86018574|gb|DR314320.1|DR314320
genomic: CAACATG-AAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: CAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAAGAGCTCAAG GCTGCAGGTATCCCAAAGAAAGTTGGCGCCTACAATTGGTATEST: gi|47831958|gb|CK121642.1|CK121642
genomic: CAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAA-GAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAA-GTTGGCGCCTACAATTGGTAT
EST: CTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|164021463|gb|ES158323.1|ES158323
genomic: CTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: CTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACEST: gi|164215344|gb|ES175729.1|ES175729
genomic: CTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGAC
EST: ACAACATGAGGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGEST: gi|124970536|gb|EL044361.1|EL044361
genomic: ACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAG
EST: GGTAAAGGATTCACTCTTGAAGAGCTCAAG GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTG
genomic: GGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatt ... attaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGgtttgtaatttctatctctctttcatttattcatataactatcaagtttcatttcttgctatatatcgatgggattgttggttatgattattgaacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatctct