Sequence
atgc intronic sequence ATGC exonic sequenceGCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaaaaccaattacaattgcatatacctagacgattcaagagtaactaacagttatttgggggttttgattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G48760.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 3
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaa--tggatattttttttcctcatcaaaaaccaattacaattgca-tatacctagacgattcaaga--gtaactaacagttatttgggggttttgatt-gcag
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GCTGTACAGACCACCTCGATGCTCACACTGTTCTATCTGTAATAACTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGGTTGGGCAGTGCATAGGATTGgtaagtttgagaataacttgaatagtttagca----ttgttgttgcaatatgcatt-acagtttaatcttgtatccagtagtgttatcagaagattgctcagcgg
upper sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaa---aaccaattacaattgca-tatacctagacgattca-agagtaactaacagttatttgggggttttgattgcag
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GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt----
upper sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaaaaccaattac---aattgca-tatacctagacgattcaagagtaactaacagttatttgggggttttgattgcag
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GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccattctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata---
upper sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaaaaccaattacaattgcatatacctagacgat--tcaagagtaactaacagttatttgggggttttgat-tgcag
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-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggac-taatgtttacatatcccaatctcacagtctttttctatcattatattatgatctagaagaacaattcttgtgtttttccttttaatgttca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164226264|gb|ES107166.1|ES107166EST: TCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTG AGAAACTATAGGTTC
genomic: TCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggata ... ttgattgcagAGAAACTATAGGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaaaaccaattacaattgcatatacctagacgattcaagagtaactaacagttatttgggggttttgattgcag
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