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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTGGTCTCTCGCGGACTCGAAGTATGCAGGGACAGCTTTGTTAGTGAAAAAATGTTTCAAGCCTCGAAAAGTTTACTTTAACTTGGACAAATTAGgtatttttatagccttgttgcttgttccttatcatcacataaatctcttgcacactagcaatttgaagccatgtttcttttatctgtcttgttatggttctgccatttccttgatctcaaagttgatgtacttgggagaaatatatcatagctagatcattgatgactaacttatatacttgtcgctctcatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G48425.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48425.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 3
GTTTGGTGGTCTCTCGCGGACTCGAAGTATGCAGGGACAGCTTTGTTAGTGAAAAAATGTTTCAAGCCTCGAAAAGTTTACTTTAACTTGGACAAATTAGgtatt----tttatagccttgttgcttgttccttat--catcacataaatctcttgcacactagcaatttgaagccatgtttcttttatctgtcttgttatggttctgccatttccttgatctcaaagttgatgtacttgggagaaatatatcatagctagatcattgatgactaacttatatacttgtcgctctcatgcag
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GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttcttttgcatat-----atatatatatatatatatatattcagcattcaaatgtca-------------------------------------------------------------------------------------------------